Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 21-276 |
| Cow position: | chr27:4834673-4834415 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 22-253 |
| Cow position: | chr27:18954574-18954335 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 23-167 |
| Cow position: | chr27:12190805-12190659 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-254 |
| Cow position: | chr27:13182759-13182993 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 23-308 |
| Cow position: | chr27:2557463-2557750 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-308 |
| Cow position: | chr27:13901654-13901363 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 23-308 |
| Cow position: | chr27:21451977-21451681 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 23-308 |
| Cow position: | chr27:26785346-26785057 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 24-294 |
| Cow position: | chr27:11490151-11489874 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 24-308 |
| Cow position: | chr27:4805310-4805027 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 26-239 |
| Cow position: | chr27:10324402-10324620 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-241 |
| Cow position: | chr27:9333195-9332971 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 26-252 |
| Cow position: | chr27:29811832-29811596 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 209 |
| Conread position: | 26-255 |
| Cow position: | chr27:28984293-28984059 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 150 |
| Conread position: | 26-266 |
| Cow position: | chr27:816235-816483 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-272 |
| Cow position: | chr27:20810944-20810689 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 26-306 |
| Cow position: | chr27:19523182-19523467 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 26-308 |
| Cow position: | chr27:2682050-2681759 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 259 |
| Conread position: | 26-308 |
| Cow position: | chr27:3232010-3232295 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:3653172-3653461 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr27:3990273-3990561 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 256 |
| Conread position: | 26-308 |
| Cow position: | chr27:4331211-4331501 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 26-308 |
| Cow position: | chr27:4982888-4982611 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 155, 16 |
| Conread position: | 26-308 |
| Cow position: | chr27:8201464-8201174 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 258 |
| Conread position: | 26-308 |
| Cow position: | chr27:10383958-10383680 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:11481459-11481170 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:13317083-13316798 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:15033363-15033652 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr27:15406147-15405864 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 26-308 |
| Cow position: | chr27:15633815-15634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 204 |
| Conread position: | 26-308 |
| Cow position: | chr27:24295732-24296030 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:25784236-25784515 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:26330460-26330171 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr27:27291921-27291628 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 27-234 |
| Cow position: | chr27:13409522-13409306 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 28-263 |
| Cow position: | chr27:18559409-18559653 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 28-308 |
| Cow position: | chr27:9090168-9089884 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 28-308 |
| Cow position: | chr27:22330017-22329740 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 32-308 |
| Cow position: | chr27:25799775-25799496 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 33-308 |
| Cow position: | chr27:5990529-5990811 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 37-308 |
| Cow position: | chr27:1502027-1501753 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 79-297 |
| Cow position: | chr27:9262804-9263028 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 204 |
| Conread position: | 87-288 |
| Cow position: | chr27:30583433-30583642 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 148 |
| Conread position: | 90-308 |
| Cow position: | chr27:4818874-4818654 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 72 |
| Conread position: | 90-308 |
| Cow position: | chr27:21392472-21392250 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 96-308 |
| Cow position: | chr27:19423921-19424138 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 185 |
| Conread position: | 104-308 |
| Cow position: | chr27:24205686-24205895 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 77, 153 |
Show alignments to all cow chromosomes.