Cow genome map

Conread name: End1-UMC-pd3end2-002-d02

Conread position: 14-308
Cow position: chr28:30870657-30870357 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 38

Conread position: 20-252
Cow position: chr28:15429243-15429012 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 50, 32

Conread position: 20-308
Cow position: chr28:34082690-34082987 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 32

Conread position: 22-307
Cow position: chr28:8786887-8786602 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 30

Conread position: 22-308
Cow position: chr28:10642966-10643241 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 30

Conread position: 22-308
Cow position: chr28:23868812-23868523 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 158, 30

Conread position: 23-239
Cow position: chr28:13357388-13357607 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 29

Conread position: 23-243
Cow position: chr28:24645037-24644808 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 47, 29

Conread position: 23-262
Cow position: chr28:12156256-12156008 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 23-271
Cow position: chr28:30328349-30328604 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 69

Conread position: 23-273
Cow position: chr28:14740973-14740738 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 151, 30

Conread position: 23-296
Cow position: chr28:17663371-17663652 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 6, 30

Conread position: 24-262
Cow position: chr28:20964298-20964546 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 29

Conread position: 24-306
Cow position: chr28:14150564-14150275 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 46, 28

Conread position: 24-308
Cow position: chr28:958436-958145 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 31

Conread position: 24-308
Cow position: chr28:26923054-26923344 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 29

Conread position: 24-308
Cow position: chr28:34597822-34597529 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 29

Conread position: 25-245
Cow position: chr28:2417365-2417130 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 28

Conread position: 25-308
Cow position: chr28:5772982-5772702 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 23

Conread position: 25-308
Cow position: chr28:6959806-6959514 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 260

Conread position: 26-183
Cow position: chr28:16386911-16386760 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 26-214
Cow position: chr28:34850726-34850529 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 26

Conread position: 26-245
Cow position: chr28:10772651-10772422 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 26

Conread position: 26-245
Cow position: chr28:15265808-15266036 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 26

Conread position: 26-248
Cow position: chr28:13865124-13864893 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 21

Conread position: 26-251
Cow position: chr28:11787385-11787615 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 26

Conread position: 26-255
Cow position: chr28:12935699-12935938 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 27

Conread position: 26-255
Cow position: chr28:21104405-21104643 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 22

Conread position: 26-255
Cow position: chr28:25762384-25762154 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 26

Conread position: 26-267
Cow position: chr28:22201519-22201278 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 27

Conread position: 26-272
Cow position: chr28:15032527-15032782 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 26

Conread position: 26-274
Cow position: chr28:17599408-17599668 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 26-275
Cow position: chr28:17686063-17686325 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 42, 12

Conread position: 26-286
Cow position: chr28:5941060-5940793 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 240

Conread position: 26-302
Cow position: chr28:29435231-29435514 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 26

Conread position: 26-304
Cow position: chr28:32785864-32786138 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 155, 25

Conread position: 26-307
Cow position: chr28:8717384-8717667 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 155, 26

Conread position: 26-307
Cow position: chr28:12429781-12429492 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 40, 106

Conread position: 26-307
Cow position: chr28:19194092-19193806 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr28:1383879-1384168 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr28:1508452-1508157 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 43, 89

Conread position: 26-308
Cow position: chr28:3001287-3001571 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 25

Conread position: 26-308
Cow position: chr28:3188443-3188731 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 257

Conread position: 26-308
Cow position: chr28:4214465-4214175 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 48, 26

Conread position: 26-308
Cow position: chr28:5211695-5211407 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 63, 26

Conread position: 26-308
Cow position: chr28:6047365-6047081 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 87

Conread position: 26-308
Cow position: chr28:6473683-6473971 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr28:7005602-7005312 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 258

Conread position: 26-308
Cow position: chr28:7744678-7744382 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 26

Conread position: 26-308
Cow position: chr28:9182443-9182154 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 24

Conread position: 26-308
Cow position: chr28:10473528-10473249 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 27

Conread position: 26-308
Cow position: chr28:10578524-10578813 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 9

Conread position: 26-308
Cow position: chr28:12406603-12406877 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr28:13607005-13606717 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 43, 27

Conread position: 26-308
Cow position: chr28:14234310-14234042 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 26-308
Cow position: chr28:14512008-14511714 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 26

Conread position: 26-308
Cow position: chr28:14666713-14666430 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 150, 26

Conread position: 26-308
Cow position: chr28:17209400-17209685 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 26

Conread position: 26-308
Cow position: chr28:17392007-17391718 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr28:18516571-18516861 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr28:23620506-23620248 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 26

Conread position: 26-308
Cow position: chr28:23794002-23794288 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 200

Conread position: 26-308
Cow position: chr28:26419427-26419716 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr28:28723797-28723513 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 215

Conread position: 26-308
Cow position: chr28:28934389-28934678 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 24

Conread position: 26-308
Cow position: chr28:29036077-29036367 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr28:29806868-29807156 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 43, 14

Conread position: 26-308
Cow position: chr28:29823759-29823470 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr28:30098450-30098161 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr28:33640142-33639853 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr28:34677638-34677912 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 27

Conread position: 28-245
Cow position: chr28:1811424-1811638 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 155, 24

Conread position: 28-308
Cow position: chr28:12650788-12650504 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 41, 24

Conread position: 28-308
Cow position: chr28:17030525-17030810 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 24

Conread position: 29-248
Cow position: chr28:13473181-13472953 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 23

Conread position: 61-308
Cow position: chr28:20934875-20935127 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 120, 220

Conread position: 64-262
Cow position: chr28:4457865-4457662 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 75

Conread position: 86-262
Cow position: chr28:17371132-17371316 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 86-307
Cow position: chr28:23675325-23675100 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 75, 190

Conread position: 86-308
Cow position: chr28:1024821-1025048 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 199

Conread position: 86-308
Cow position: chr28:2222853-2223081 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 45, 12

Conread position: 86-308
Cow position: chr28:30961050-30960830 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 80

Conread position: 87-308
Cow position: chr28:17602530-17602757 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 93, 195

Conread position: 87-308
Cow position: chr28:23615655-23615428 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 93, 194

Conread position: 88-308
Cow position: chr28:16211825-16212044 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 93, 164

Conread position: 90-255
Cow position: chr28:21363016-21362844 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 91, 0

Conread position: 90-267
Cow position: chr28:15351616-15351800 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 37

Conread position: 90-274
Cow position: chr28:30369499-30369311 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 68, 135

Conread position: 90-307
Cow position: chr28:18140206-18140428 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 91, 148

Conread position: 95-308
Cow position: chr28:1214278-1214496 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 186

Conread position: 95-308
Cow position: chr28:15715474-15715257 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 169

Conread position: 96-307
Cow position: chr28:20408399-20408182 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 189

Conread position: 99-308
Cow position: chr28:15687790-15687579 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 92

Show alignments to all cow chromosomes.