Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 23-251 |
| Cow position: | chr29:35228221-35227984 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 23-255 |
| Cow position: | chr29:32942193-32941952 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 23-255 |
| Cow position: | chr29:33009093-33008865 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 23-308 |
| Cow position: | chr29:2103389-2103103 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 229 |
| Conread position: | 23-308 |
| Cow position: | chr29:39076171-39076463 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 24-308 |
| Cow position: | chr29:9079256-9079541 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 25-308 |
| Cow position: | chr29:15943886-15943608 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 26-194 |
| Cow position: | chr29:41183636-41183806 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-234 |
| Cow position: | chr29:528972-529189 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 26-245 |
| Cow position: | chr29:4519282-4519051 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-245 |
| Cow position: | chr29:32807904-32807679 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-254 |
| Cow position: | chr29:4480849-4481085 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-255 |
| Cow position: | chr29:32732643-32732414 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 146 |
| Conread position: | 26-258 |
| Cow position: | chr29:19398204-19397964 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 26-262 |
| Cow position: | chr29:10237113-10237358 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-262 |
| Cow position: | chr29:11136565-11136807 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-264 |
| Cow position: | chr29:2307546-2307298 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-272 |
| Cow position: | chr29:20254708-20254454 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-273 |
| Cow position: | chr29:2694245-2693990 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-289 |
| Cow position: | chr29:20999748-20999490 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-296 |
| Cow position: | chr29:13027751-13027488 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 26-296 |
| Cow position: | chr29:14116359-14116085 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-296 |
| Cow position: | chr29:30432650-30432924 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-304 |
| Cow position: | chr29:14208023-14208307 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 256 |
| Conread position: | 26-305 |
| Cow position: | chr29:38349817-38350100 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:44924-45208 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:4875593-4875875 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:5240940-5240652 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 35, 256 |
| Conread position: | 26-308 |
| Cow position: | chr29:5961548-5961259 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr29:6262465-6262753 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 26-308 |
| Cow position: | chr29:6935028-6934739 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:7664457-7664743 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:7811651-7811941 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 258 |
| Conread position: | 26-308 |
| Cow position: | chr29:8623668-8623952 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 26-308 |
| Cow position: | chr29:10297320-10297606 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:10452271-10452560 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 42, 261 |
| Conread position: | 26-308 |
| Cow position: | chr29:10643870-10644158 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:10820170-10820459 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 43, 256 |
| Conread position: | 26-308 |
| Cow position: | chr29:12798129-12797838 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:19657426-19657137 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:19761603-19761316 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:23980250-23979966 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:25928965-25929252 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:26161290-26161577 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 229 |
| Conread position: | 26-308 |
| Cow position: | chr29:28696835-28697123 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 255 |
| Conread position: | 26-308 |
| Cow position: | chr29:32962852-32962571 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:35002129-35002418 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 26-308 |
| Cow position: | chr29:35273494-35273783 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr29:36209241-36208952 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:38229548-38229263 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 26-308 |
| Cow position: | chr29:42807528-42807242 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-308 |
| Cow position: | chr29:43327060-43326770 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 258 |
| Conread position: | 26-308 |
| Cow position: | chr29:43964009-43964304 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 276 |
| Conread position: | 26-308 |
| Cow position: | chr29:45462776-45462489 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 27-245 |
| Cow position: | chr29:8589193-8589425 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 27-308 |
| Cow position: | chr29:2837792-2838080 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 256 |
| Conread position: | 28-290 |
| Cow position: | chr29:7604943-7604676 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 30-308 |
| Cow position: | chr29:30106314-30106589 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 149, 22 |
| Conread position: | 36-308 |
| Cow position: | chr29:32806595-32806325 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 174 |
| Conread position: | 37-247 |
| Cow position: | chr29:32175807-32175587 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 62-308 |
| Cow position: | chr29:16170039-16170289 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 209 |
| Conread position: | 64-304 |
| Cow position: | chr29:21255454-21255211 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 64-308 |
| Cow position: | chr29:14454721-14454479 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 65-297 |
| Cow position: | chr29:133474-133239 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 86-308 |
| Cow position: | chr29:9639046-9639273 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 195 |
| Conread position: | 87-308 |
| Cow position: | chr29:26263104-26262878 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 87-308 |
| Cow position: | chr29:36633877-36634093 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 87, 173 |
| Conread position: | 88-304 |
| Cow position: | chr29:40116792-40116564 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 90-308 |
| Cow position: | chr29:13099651-13099426 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 198 |
| Conread position: | 95-297 |
| Cow position: | chr29:17153710-17153504 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 86, 131 |
| Conread position: | 96-308 |
| Cow position: | chr29:32289857-32289642 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 158 |
| Conread position: | 96-308 |
| Cow position: | chr29:43517508-43517725 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 75, 17 |
Show alignments to all cow chromosomes.