Cow genome map

Conread name: Fet1-UMC-pd20fet-013-h01

Conread position: 15-252
Cow position: chr11:52526887-52526638 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 183

Conread position: 15-276
Cow position: chr11:42372250-42371988 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 84

Conread position: 15-286
Cow position: chr11:27659676-27659399 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 140

Conread position: 15-304
Cow position: chr11:17105264-17105549 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 67

Conread position: 15-306
Cow position: chr11:418304-418588 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 63

Conread position: 15-306
Cow position: chr11:7228679-7228384 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 15-306
Cow position: chr11:9732249-9732544 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 182

Conread position: 15-306
Cow position: chr11:26068638-26068928 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 44

Conread position: 15-306
Cow position: chr11:30201264-30201559 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 15-306
Cow position: chr11:38600512-38600804 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 191

Conread position: 15-306
Cow position: chr11:44580804-44581100 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 15-306
Cow position: chr11:52845964-52845675 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 183

Conread position: 15-418
Cow position: chr11:9154762-9155185 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 12, 176

Conread position: 15-418
Cow position: chr11:15987678-15987249 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 262

Conread position: 20-418
Cow position: chr11:40773609-40774024 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 20-418
Cow position: chr11:44254494-44254077 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 57, 108

Conread position: 21-296
Cow position: chr11:27937823-27937548 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 90

Conread position: 21-297
Cow position: chr11:87137798-87138075 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 154

Conread position: 25-306
Cow position: chr11:31865032-31864748 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 26-219
Cow position: chr11:29663636-29663832 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 49, 0

Conread position: 26-294
Cow position: chr11:69655675-69655405 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 26-306
Cow position: chr11:20731809-20732092 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr11:63391063-63391345 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 26-306
Cow position: chr11:84966527-84966248 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 26-405
Cow position: chr11:46778090-46778482 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 60, 0

Conread position: 26-414
Cow position: chr11:27725487-27725896 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 26-414
Cow position: chr11:56917590-56917992 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 26-415
Cow position: chr11:26122508-26122922 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 285
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 193

Conread position: 44-418
Cow position: chr11:4061490-4061875 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 184, 31

Conread position: 45-414
Cow position: chr11:19100089-19100485 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 45-418
Cow position: chr11:32078385-32078787 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 45-418
Cow position: chr11:85391429-85391831 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 0

Conread position: 49-418
Cow position: chr11:9387438-9387822 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 310

Conread position: 85-415
Cow position: chr11:76565803-76565447 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 246
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 68

Conread position: 85-418
Cow position: chr11:7720044-7720389 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 129, 111

Conread position: 112-418
Cow position: chr11:31749332-31749640 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 141

Conread position: 216-418
Cow position: chr11:12317811-12318013 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 91, 82

Conread position: 265-414
Cow position: chr11:57626024-57626177 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 287-415
Cow position: chr11:21897558-21897683 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 54

Conread position: 287-418
Cow position: chr11:47758133-47758268 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 288-414
Cow position: chr11:52845671-52845541 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 288-415
Cow position: chr11:30121519-30121647 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 54

Conread position: 288-418
Cow position: chr11:4054171-4054303 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 114
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 40

Conread position: 288-418
Cow position: chr11:24292583-24292452 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 8, 54

Conread position: 288-418
Cow position: chr11:67155763-67155631 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 80

Conread position: 289-398
Cow position: chr11:25099044-25099157 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 289-413
Cow position: chr11:41422780-41422908 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:2350078-2349949 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:7121838-7121967 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:17105556-17105682 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:20732097-20732222 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:28124640-28124511 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:30201564-30201688 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:35862504-35862631 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 289-414
Cow position: chr11:38600809-38600935 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:41744686-41744557 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:47737416-47737541 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:52421595-52421469 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr11:63391350-63391479 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:75392378-75392249 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:78791939-78792068 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 110
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr11:84966243-84966114 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-415
Cow position: chr11:39585596-39585726 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 290-419
Cow position: chr11:45106980-45106843 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 296-418
Cow position: chr11:31864193-31864076 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 297-418
Cow position: chr11:71331617-71331498 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 42

Conread position: 304-418
Cow position: chr11:12356287-12356401 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 304-418
Cow position: chr11:37280575-37280688 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 306-414
Cow position: chr11:3495089-3494981 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr11:30254335-30254231 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 306-414
Cow position: chr11:32454166-32454058 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr11:38575378-38575486 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr11:67446135-67446243 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr11:67452759-67452651 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr11:15126922-15126813 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 95
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 306-417
Cow position: chr11:24395420-24395313 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr11:4268041-4268149 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 306-418
Cow position: chr11:5483330-5483221 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr11:8265625-8265514 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 306-418
Cow position: chr11:10850225-10850116 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr11:12095898-12095787 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 306-418
Cow position: chr11:14261124-14261236 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:15994270-15994158 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 100
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:22934485-22934595 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 32

Conread position: 306-418
Cow position: chr11:23882115-23882003 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:27659067-27658958 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 306-418
Cow position: chr11:31928280-31928168 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:33602525-33602637 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:41168590-41168702 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:49172396-49172506 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 306-418
Cow position: chr11:53429917-53430029 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr11:66860372-66860483 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 306-418
Cow position: chr11:67296903-67297013 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 307-414
Cow position: chr11:8445016-8445123 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 307-415
Cow position: chr11:7118517-7118409 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 307-415
Cow position: chr11:43512528-43512633 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 307-418
Cow position: chr11:11591072-11590961 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 97
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 307-418
Cow position: chr11:75740589-75740480 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 313-410
Cow position: chr11:67864172-67864269 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.