Cow genome map
| Conread name: | Fet1-UMC-pd20fet-013-h01 |
| Conread position: | 1-305 |
| Cow position: | chr14:50113755-50113446 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-306 |
| Cow position: | chr14:41445390-41445076 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-307 |
| Cow position: | chr14:13463816-13463510 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 181 |
| Conread position: | 14-299 |
| Cow position: | chr14:44554198-44553911 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 107 |
| Conread position: | 14-409 |
| Cow position: | chr14:35931731-35931325 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 15-221 |
| Cow position: | chr14:35496898-35496692 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 15-272 |
| Cow position: | chr14:49327129-49327386 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 15-306 |
| Cow position: | chr14:1660826-1660532 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 167 |
| Conread position: | 15-306 |
| Cow position: | chr14:16997669-16997959 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 21-414 |
| Cow position: | chr14:45026588-45027009 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 333 |
| Conread position: | 22-305 |
| Cow position: | chr14:36710682-36710962 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 6, 98 |
| Conread position: | 26-284 |
| Cow position: | chr14:44292991-44292735 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 26-285 |
| Cow position: | chr14:46302264-46301997 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-306 |
| Cow position: | chr14:749240-749522 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 26-306 |
| Cow position: | chr14:16917368-16917649 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 31-306 |
| Cow position: | chr14:19325902-19326180 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 33-276 |
| Cow position: | chr14:17763036-17763280 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 42, 165 |
| Conread position: | 45-415 |
| Cow position: | chr14:13782201-13781809 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 318 |
| Conread position: | 45-415 |
| Cow position: | chr14:46123466-46123073 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 49-418 |
| Cow position: | chr14:11474955-11475347 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 49-418 |
| Cow position: | chr14:33679390-33679022 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 98-418 |
| Cow position: | chr14:30593953-30594263 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 86 |
| Conread position: | 107-418 |
| Cow position: | chr14:15273274-15273610 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 90, 170 |
| Conread position: | 114-418 |
| Cow position: | chr14:22029201-22029526 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 117-418 |
| Cow position: | chr14:35427782-35427486 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 178, 27 |
| Conread position: | 136-365 |
| Cow position: | chr14:13320642-13320877 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 266-414 |
| Cow position: | chr14:9450435-9450585 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 288-414 |
| Cow position: | chr14:19549271-19549144 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 288-415 |
| Cow position: | chr14:37256234-37256106 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 288-418 |
| Cow position: | chr14:9849827-9849952 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 288-418 |
| Cow position: | chr14:35383572-35383700 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 288-418 |
| Cow position: | chr14:40344388-40344254 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 288-418 |
| Cow position: | chr14:48361243-48361113 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 289-411 |
| Cow position: | chr14:31684609-31684735 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-413 |
| Cow position: | chr14:16807246-16807373 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 289-413 |
| Cow position: | chr14:44291141-44291013 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr14:1660527-1660402 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 80 |
| Conread position: | 289-414 |
| Cow position: | chr14:7988588-7988462 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 289-414 |
| Cow position: | chr14:13237739-13237867 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 80 |
| Conread position: | 289-414 |
| Cow position: | chr14:17489253-17489381 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 289-414 |
| Cow position: | chr14:23255266-23255395 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr14:34763079-34763208 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr14:38434958-38434832 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 289-414 |
| Cow position: | chr14:38460380-38460509 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr14:46222156-46222027 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr14:36908130-36908263 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr14:37226232-37226099 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 297-418 |
| Cow position: | chr14:46434681-46434560 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 304-414 |
| Cow position: | chr14:44260514-44260405 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 306-414 |
| Cow position: | chr14:20784641-20784536 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-414 |
| Cow position: | chr14:22104503-22104611 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr14:29045627-29045730 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 306-414 |
| Cow position: | chr14:40385868-40385976 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr14:13861466-13861575 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr14:44691234-44691125 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:192105-191995 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:5514989-5514877 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:12740990-12741102 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:16917675-16917786 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:19326206-19326317 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:32449014-32448902 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:34668735-34668848 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:34904407-34904296 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:41444384-41444272 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:45087258-45087147 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 306-418 |
| Cow position: | chr14:45164148-45164038 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 306-419 |
| Cow position: | chr14:38813422-38813535 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-418 |
| Cow position: | chr14:11563612-11563501 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-414 |
| Cow position: | chr14:29774065-29774166 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 310-414 |
| Cow position: | chr14:30713733-30713837 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-418 |
| Cow position: | chr14:13275365-13275259 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 310-418 |
| Cow position: | chr14:17688899-17688791 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-414 |
| Cow position: | chr14:33391883-33391979 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.