Cow genome map

Conread name: Fet1-UMC-pd20fet-013-h01

Conread position: 3-418
Cow position: chr18:16146217-16146632 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 79, 48

Conread position: 14-291
Cow position: chr18:35291363-35291087 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 162

Conread position: 15-294
Cow position: chr18:47744561-47744278 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 15-298
Cow position: chr18:37508775-37508489 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 226

Conread position: 15-306
Cow position: chr18:23702272-23702567 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 15-306
Cow position: chr18:51460030-51460325 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 174

Conread position: 15-306
Cow position: chr18:54066240-54066527 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 180

Conread position: 15-414
Cow position: chr18:37700683-37701107 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 261

Conread position: 15-418
Cow position: chr18:5535791-5535372 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 279
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 9, 30

Conread position: 15-423
Cow position: chr18:36776085-36775649 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 16

Conread position: 21-297
Cow position: chr18:56483874-56484151 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 245

Conread position: 23-306
Cow position: chr18:51662951-51662665 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 25-223
Cow position: chr18:699973-700173 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 156

Conread position: 26-152
Cow position: chr18:52573912-52573783 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr18:11272047-11272332 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 176
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr18:16081324-16081041 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr18:16092617-16092334 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 26-306
Cow position: chr18:16173812-16174091 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 26-306
Cow position: chr18:22182740-22183013 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 26-306
Cow position: chr18:29863807-29864090 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr18:32165134-32165413 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 170

Conread position: 26-306
Cow position: chr18:40483793-40483522 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 139

Conread position: 26-306
Cow position: chr18:51344903-51344620 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr18:52630460-52630732 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 179

Conread position: 26-306
Cow position: chr18:52655610-52655330 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 26-306
Cow position: chr18:54026606-54026316 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 26-306
Cow position: chr18:54032509-54032226 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-418
Cow position: chr18:38090558-38090967 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 145

Conread position: 45-414
Cow position: chr18:29071207-29070833 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 45-418
Cow position: chr18:36511400-36511001 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 37, 322

Conread position: 84-406
Cow position: chr18:16391435-16391752 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 55

Conread position: 87-419
Cow position: chr18:37491545-37491203 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 70, 76

Conread position: 108-414
Cow position: chr18:27835371-27835702 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 93, 238

Conread position: 180-414
Cow position: chr18:1046990-1046739 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 209-418
Cow position: chr18:39813033-39813251 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 275-418
Cow position: chr18:51484121-51483975 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 285-418
Cow position: chr18:27168139-27168007 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 288-412
Cow position: chr18:54026312-54026187 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 288-418
Cow position: chr18:4948457-4948325 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 54

Conread position: 289-409
Cow position: chr18:18216019-18215895 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:1956658-1956787 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:3755455-3755326 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:16081036-16080907 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:19354874-19354745 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:21530036-21529910 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr18:25941414-25941285 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 289-414
Cow position: chr18:28767313-28767184 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:30762447-30762576 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:32437591-32437720 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:33987971-33987842 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:35295686-35295557 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:47744006-47743877 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:51662660-51662531 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr18:55417235-55417109 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 53

Conread position: 289-418
Cow position: chr18:23801533-23801403 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 8, 0

Conread position: 289-418
Cow position: chr18:26244067-26244197 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 53

Conread position: 289-418
Cow position: chr18:28929080-28929207 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 39

Conread position: 289-418
Cow position: chr18:29864095-29864227 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 298-412
Cow position: chr18:27538915-27538802 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 41

Conread position: 306-407
Cow position: chr18:5202016-5201915 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr18:51460351-51460456 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 306-414
Cow position: chr18:51696784-51696675 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 306-415
Cow position: chr18:32656180-32656071 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr18:14132885-14132773 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr18:16092308-16092196 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr18:17322896-17322785 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 306-418
Cow position: chr18:25922882-25922770 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr18:28969797-28969906 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr18:33101816-33101704 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr18:37664890-37664779 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 307-418
Cow position: chr18:36647663-36647552 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 318-414
Cow position: chr18:32165447-32165543 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.