Cow genome map

Conread name: Fet1-UMC-pd20fet-013-h01

Conread position: 1-298
Cow position: chr21:4186852-4186550 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-306
Cow position: chr21:2538244-2538554 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 220

Conread position: 3-305
Cow position: chr21:995535-995833 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 166

Conread position: 13-306
Cow position: chr21:17223954-17224247 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 58, 138

Conread position: 14-204
Cow position: chr21:37123335-37123533 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 15-164
Cow position: chr21:2768951-2769101 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 15-166
Cow position: chr21:4586812-4586964 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 83

Conread position: 15-220
Cow position: chr21:3923152-3922943 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 15-284
Cow position: chr21:28258561-28258295 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 236

Conread position: 15-306
Cow position: chr21:34255701-34255997 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 170

Conread position: 15-306
Cow position: chr21:34656845-34656557 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 78

Conread position: 15-414
Cow position: chr21:39225170-39225594 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 292
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 296

Conread position: 15-415
Cow position: chr21:28878826-28879251 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 161

Conread position: 20-306
Cow position: chr21:2513732-2513447 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 164

Conread position: 20-306
Cow position: chr21:32397165-32397455 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 20-415
Cow position: chr21:21171425-21171827 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 118

Conread position: 20-424
Cow position: chr21:35390260-35390679 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 34

Conread position: 26-305
Cow position: chr21:25189520-25189238 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 26-306
Cow position: chr21:1195416-1195138 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 255

Conread position: 26-306
Cow position: chr21:2878949-2879232 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr21:4899086-4899357 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 49, 174

Conread position: 26-306
Cow position: chr21:15398097-15398380 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 26-306
Cow position: chr21:30564629-30564351 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 26-306
Cow position: chr21:30596211-30596493 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 26-306
Cow position: chr21:36375866-36375584 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 26-306
Cow position: chr21:47648216-47647931 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-309
Cow position: chr21:5020022-5019738 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 26-410
Cow position: chr21:31251875-31251475 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 227

Conread position: 26-418
Cow position: chr21:1285379-1285771 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 32

Conread position: 26-418
Cow position: chr21:2419076-2418664 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 26-418
Cow position: chr21:26400888-26401292 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 327

Conread position: 33-304
Cow position: chr21:19351991-19352265 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 33-306
Cow position: chr21:27620624-27620902 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 59-425
Cow position: chr21:19613583-19613212 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 164-418
Cow position: chr21:27610023-27610284 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 92, 52

Conread position: 287-418
Cow position: chr21:2538557-2538691 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 63

Conread position: 288-406
Cow position: chr21:7154926-7154804 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 288-414
Cow position: chr21:27068369-27068499 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 288-414
Cow position: chr21:27620906-27621035 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 48

Conread position: 288-418
Cow position: chr21:3805519-3805385 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 288-418
Cow position: chr21:34256001-34256132 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 54

Conread position: 289-401
Cow position: chr21:4481887-4481771 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 289-410
Cow position: chr21:33317915-33318037 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 73

Conread position: 289-414
Cow position: chr21:4036843-4036715 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 59

Conread position: 289-414
Cow position: chr21:4091924-4091799 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 52

Conread position: 289-414
Cow position: chr21:4899584-4899714 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 81

Conread position: 289-414
Cow position: chr21:7038940-7038811 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr21:7063079-7063208 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr21:11291279-11291151 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 47

Conread position: 289-414
Cow position: chr21:26634567-26634696 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr21:37373817-37373688 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr21:41797132-41797261 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr21:47976427-47976298 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-417
Cow position: chr21:35143316-35143445 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 53

Conread position: 289-418
Cow position: chr21:27148965-27149098 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-418
Cow position: chr21:28853256-28853388 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 289-418
Cow position: chr21:30596498-30596631 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-418
Cow position: chr21:31513728-31513859 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 292-415
Cow position: chr21:4736877-4736999 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 294-418
Cow position: chr21:9894729-9894606 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 13, 45

Conread position: 297-409
Cow position: chr21:37040037-37040148 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 69

Conread position: 297-415
Cow position: chr21:41797-41681 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 35

Conread position: 298-414
Cow position: chr21:11508189-11508072 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 9, 97

Conread position: 298-418
Cow position: chr21:5011157-5011278 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 303-414
Cow position: chr21:32397478-32397589 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-413
Cow position: chr21:36375558-36375451 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr21:2513421-2513313 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr21:7163411-7163519 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr21:19352495-19352387 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 94
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr21:29949395-29949501 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 306-418
Cow position: chr21:1195112-1195003 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr21:2665569-2665681 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr21:4186514-4186406 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr21:5019715-5019604 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 306-418
Cow position: chr21:22943186-22943074 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 15

Conread position: 306-418
Cow position: chr21:44254192-44254080 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 307-414
Cow position: chr21:39427645-39427538 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 307-415
Cow position: chr21:28614885-28614779 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 307-427
Cow position: chr21:3922790-3922670 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 317-418
Cow position: chr21:21026035-21025934 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 324-418
Cow position: chr21:48529866-48529960 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.