Cow genome map
| Conread name: | Fet1-UMC-pd20fet-013-h01 |
| Conread position: | 1-305 |
| Cow position: | chr23:34256230-34256539 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 14-173 |
| Cow position: | chr23:11343212-11343049 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 15-299 |
| Cow position: | chr23:2579303-2579018 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 15-306 |
| Cow position: | chr23:1011119-1011415 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 15-306 |
| Cow position: | chr23:8290133-8289838 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 15-306 |
| Cow position: | chr23:29442387-29442681 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 15-415 |
| Cow position: | chr23:1326692-1327099 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 163 |
| Conread position: | 20-417 |
| Cow position: | chr23:4516244-4515820 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 26-306 |
| Cow position: | chr23:2321245-2321526 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 179 |
| Conread position: | 26-306 |
| Cow position: | chr23:8705560-8705281 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 26-306 |
| Cow position: | chr23:14960251-14960534 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-306 |
| Cow position: | chr23:15568223-15568507 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 182 |
| Conread position: | 26-306 |
| Cow position: | chr23:19492256-19491974 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 112 |
| Conread position: | 26-418 |
| Cow position: | chr23:4891391-4890972 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-418 |
| Cow position: | chr23:5624879-5625287 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 331 |
| Conread position: | 33-306 |
| Cow position: | chr23:609418-609148 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 163 |
| Conread position: | 33-306 |
| Cow position: | chr23:3285448-3285177 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 163 |
| Conread position: | 33-306 |
| Cow position: | chr23:20153530-20153803 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 229 |
| Conread position: | 33-418 |
| Cow position: | chr23:2024392-2024802 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 328 |
| Conread position: | 41-292 |
| Cow position: | chr23:38583626-38583382 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 245, 152 |
| Conread position: | 44-430 |
| Cow position: | chr23:31892727-31892337 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 190 |
| Conread position: | 45-418 |
| Cow position: | chr23:2760580-2760186 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 317 |
| Conread position: | 87-418 |
| Cow position: | chr23:22144666-22145022 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 125-415 |
| Cow position: | chr23:15504610-15504315 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 43 |
| Conread position: | 288-414 |
| Cow position: | chr23:28221119-28220992 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 288-418 |
| Cow position: | chr23:528488-528354 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 289-388 |
| Cow position: | chr23:4080553-4080450 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-400 |
| Cow position: | chr23:1249173-1249058 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:943389-943260 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:1800051-1799924 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 289-414 |
| Cow position: | chr23:4266430-4266559 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:7313681-7313810 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:14264759-14264632 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 289-414 |
| Cow position: | chr23:15568512-15568641 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:21773501-21773630 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:25350768-25350639 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr23:36097231-36097102 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr23:4308765-4308899 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr23:19491969-19491836 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 306-409 |
| Cow position: | chr23:8289812-8289711 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 306-415 |
| Cow position: | chr23:1958553-1958444 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:1339383-1339496 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:3708794-3708686 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:11713468-11713580 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:11781184-11781075 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:14960560-14960669 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:22169278-22169164 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 306-418 |
| Cow position: | chr23:31165219-31165107 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:36028990-36029102 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr23:37200127-37200236 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 307-414 |
| Cow position: | chr23:1204933-1204825 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 307-415 |
| Cow position: | chr23:16612403-16612511 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-418 |
| Cow position: | chr23:4436047-4435939 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 310-418 |
| Cow position: | chr23:1050138-1050247 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 310-418 |
| Cow position: | chr23:4638222-4638330 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-414 |
| Cow position: | chr23:41142724-41142628 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 324-414 |
| Cow position: | chr23:21792096-21792186 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 324-418 |
| Cow position: | chr23:1399850-1399944 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 79 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.