Cow genome map
| Conread name: | Fet1-UMC-pd20fet-013-h01 |
| Conread position: | 1-223 |
| Cow position: | chr28:3013171-3013400 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-272 |
| Cow position: | chr28:5824605-5824331 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 1-296 |
| Cow position: | chr28:5816422-5816124 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 8-250 |
| Cow position: | chr28:21362278-21362030 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 12-240 |
| Cow position: | chr28:10771852-10771624 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 180 |
| Conread position: | 14-219 |
| Cow position: | chr28:23800369-23800172 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 14-409 |
| Cow position: | chr28:23024939-23024521 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 143 |
| Conread position: | 15-198 |
| Cow position: | chr28:444162-443976 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 15-252 |
| Cow position: | chr28:12217534-12217773 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 181 |
| Conread position: | 15-306 |
| Cow position: | chr28:7335744-7335453 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 182 |
| Conread position: | 15-418 |
| Cow position: | chr28:1956124-1955694 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 298 |
| Conread position: | 15-418 |
| Cow position: | chr28:10579109-10579534 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 15-418 |
| Cow position: | chr28:22230574-22231002 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 20-306 |
| Cow position: | chr28:11787843-11788132 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 26-295 |
| Cow position: | chr28:20935670-20935942 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 204 |
| Conread position: | 26-298 |
| Cow position: | chr28:5210865-5210590 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-298 |
| Cow position: | chr28:7743885-7743610 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-306 |
| Cow position: | chr28:5111975-5112258 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-306 |
| Cow position: | chr28:5748963-5749243 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 26-306 |
| Cow position: | chr28:6958976-6958693 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 26-306 |
| Cow position: | chr28:17391158-17390875 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-306 |
| Cow position: | chr28:21379280-21378997 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 26-306 |
| Cow position: | chr28:24885604-24885321 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-414 |
| Cow position: | chr28:22040665-22041063 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 216 |
| Conread position: | 26-414 |
| Cow position: | chr28:23310570-23310976 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-415 |
| Cow position: | chr28:24670334-24669927 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 186 |
| Conread position: | 26-418 |
| Cow position: | chr28:1165142-1165561 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-418 |
| Cow position: | chr28:8381790-8381371 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 33-298 |
| Cow position: | chr28:29036908-29037176 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 33-418 |
| Cow position: | chr28:30097614-30097200 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 41-418 |
| Cow position: | chr28:33255050-33254645 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 45-418 |
| Cow position: | chr28:24488846-24488476 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 151 |
| Conread position: | 90-419 |
| Cow position: | chr28:6061461-6061117 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 163, 28 |
| Conread position: | 105-414 |
| Cow position: | chr28:34730575-34730261 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 120-418 |
| Cow position: | chr28:17664676-17664992 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 122-418 |
| Cow position: | chr28:30960258-30959940 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 120 |
| Conread position: | 137-415 |
| Cow position: | chr28:10294065-10293800 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 227-418 |
| Cow position: | chr28:21362026-21361829 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 115 |
| Conread position: | 287-418 |
| Cow position: | chr28:15685867-15685735 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 288-423 |
| Cow position: | chr28:10616586-10616722 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 289-414 |
| Cow position: | chr28:7828953-7828828 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 289-414 |
| Cow position: | chr28:9181330-9181202 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 289-414 |
| Cow position: | chr28:16596784-16596660 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 289-414 |
| Cow position: | chr28:24885316-24885187 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr28:25849175-25849304 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr28:28928288-28928162 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 289-414 |
| Cow position: | chr28:30806229-30806100 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr28:32588573-32588702 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr28:34582379-34582250 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr28:15918066-15918198 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 299-418 |
| Cow position: | chr28:10302283-10302168 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 303-418 |
| Cow position: | chr28:30534624-30534739 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr28:2644153-2644045 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr28:24591308-24591200 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr28:28470457-28470349 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr28:785104-784995 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr28:3013532-3013638 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:1215396-1215505 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:1507306-1507194 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:3189806-3189918 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:5112284-5112393 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:5210556-5210447 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:6536360-6536470 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:17390849-17390737 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr28:34596681-34596569 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-415 |
| Cow position: | chr28:21568342-21568233 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 307-418 |
| Cow position: | chr28:26423828-26423936 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 319-418 |
| Cow position: | chr28:6958656-6958556 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 326-414 |
| Cow position: | chr28:1460523-1460435 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.