Cow genome map
| Conread name: | Fet1-UMC-pd20fet-013-h01 |
| Conread position: | 8-414 |
| Cow position: | chr29:5960569-5960173 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 8-418 |
| Cow position: | chr29:6263274-6263704 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 14-414 |
| Cow position: | chr29:13850157-13850573 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 15-151 |
| Cow position: | chr29:9080066-9080206 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 15-160 |
| Cow position: | chr29:40471391-40471242 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 15-305 |
| Cow position: | chr29:13899392-13899098 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 15-306 |
| Cow position: | chr29:20253896-20253598 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 216 |
| Conread position: | 15-306 |
| Cow position: | chr29:35299646-35299351 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 15-414 |
| Cow position: | chr29:16689555-16689132 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 15-414 |
| Cow position: | chr29:40294058-40293633 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 295 |
| Conread position: | 15-418 |
| Cow position: | chr29:45461959-45461527 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 20-253 |
| Cow position: | chr29:9330638-9330398 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 20-306 |
| Cow position: | chr29:21226697-21226412 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 176 |
| Conread position: | 26-298 |
| Cow position: | chr29:7428401-7428672 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 26-304 |
| Cow position: | chr29:16346920-16346639 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-305 |
| Cow position: | chr29:45207225-45206944 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 26-306 |
| Cow position: | chr29:1478166-1477883 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-306 |
| Cow position: | chr29:28657656-28657938 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 26-306 |
| Cow position: | chr29:39077002-39077283 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 26-374 |
| Cow position: | chr29:10821202-10821548 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 290 |
| Conread position: | 26-405 |
| Cow position: | chr29:32806817-32807197 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 51 |
| Conread position: | 26-418 |
| Cow position: | chr29:8624482-8624896 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 56, 220 |
| Conread position: | 30-297 |
| Cow position: | chr29:10845667-10845396 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 33-306 |
| Cow position: | chr29:19890280-19890008 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 34-306 |
| Cow position: | chr29:26162130-26162404 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 263 |
| Conread position: | 45-398 |
| Cow position: | chr29:5390531-5390154 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 265 |
| Conread position: | 288-406 |
| Cow position: | chr29:17407566-17407444 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 288-415 |
| Cow position: | chr29:6873445-6873573 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 288-418 |
| Cow position: | chr29:648250-648116 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 288-418 |
| Cow position: | chr29:2746026-2746157 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 84 |
| Conread position: | 288-418 |
| Cow position: | chr29:14500294-14500160 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 288-423 |
| Cow position: | chr29:131949-131814 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 289-414 |
| Cow position: | chr29:666981-667110 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:5785238-5785110 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:7428685-7428815 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:7846821-7846692 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:10021899-10022028 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:14743620-14743749 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:15260563-15260692 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:15797338-15797463 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 289-414 |
| Cow position: | chr29:15967127-15967256 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:16036987-16037116 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:19890003-19889877 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 289-414 |
| Cow position: | chr29:21430427-21430555 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 289-414 |
| Cow position: | chr29:31095161-31095289 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 289-414 |
| Cow position: | chr29:39424712-39424841 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-414 |
| Cow position: | chr29:42256548-42256677 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 289-418 |
| Cow position: | chr29:46033-46162 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 52 |
| Conread position: | 290-414 |
| Cow position: | chr29:13899091-13898963 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 290-414 |
| Cow position: | chr29:28657944-28658072 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 296-418 |
| Cow position: | chr29:13019109-13018989 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 297-418 |
| Cow position: | chr29:9640359-9640481 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 298-414 |
| Cow position: | chr29:608214-608330 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 298-414 |
| Cow position: | chr29:45625763-45625646 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 298-418 |
| Cow position: | chr29:10644997-10645115 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 304-418 |
| Cow position: | chr29:10821509-10821623 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-413 |
| Cow position: | chr29:253315-253208 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr29:15624297-15624405 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr29:31183813-31183705 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr29:32557340-32557448 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-414 |
| Cow position: | chr29:40470818-40470713 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-415 |
| Cow position: | chr29:2102251-2102142 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr29:25991639-25991748 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-415 |
| Cow position: | chr29:42806131-42806024 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:408853-408962 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:529993-530103 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:6933902-6933790 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:14209143-14209252 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:15995973-15996085 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:16171701-16171813 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:16346611-16346500 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:19620861-19620973 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:19656309-19656197 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:23979114-23979002 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:25930111-25930223 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-418 |
| Cow position: | chr29:35274614-35274726 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-419 |
| Cow position: | chr29:9330382-9330269 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-414 |
| Cow position: | chr29:13922911-13922804 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-418 |
| Cow position: | chr29:2464466-2464577 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 309-418 |
| Cow position: | chr29:40500608-40500717 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-418 |
| Cow position: | chr29:2838935-2839043 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-418 |
| Cow position: | chr29:5237419-5237311 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-418 |
| Cow position: | chr29:35003015-35003122 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-418 |
| Cow position: | chr29:34739438-34739540 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.