Cow genome map

Conread name: Fet1-UMC-pd20fet-013-h01

Conread position: 1-306
Cow position: chr5:44709819-44710129 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-306
Cow position: chr5:73486362-73486670 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 14-399
Cow position: chr5:3252590-3252989 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 372

Conread position: 14-407
Cow position: chr5:42043446-42043041 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 46

Conread position: 14-415
Cow position: chr5:18884035-18884445 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 14-418
Cow position: chr5:7583461-7583874 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 51

Conread position: 15-137
Cow position: chr5:18288376-18288502 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 15-306
Cow position: chr5:23829624-23829920 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 15-414
Cow position: chr5:37379629-37379225 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 63

Conread position: 15-414
Cow position: chr5:51745768-51745350 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 318

Conread position: 15-417
Cow position: chr5:50390573-50390990 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 185

Conread position: 15-418
Cow position: chr5:47342259-47341837 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 290
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 60, 116

Conread position: 21-306
Cow position: chr5:6585922-6586210 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 25-173
Cow position: chr5:7395793-7395642 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 26-155
Cow position: chr5:47561023-47561155 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 26-223
Cow position: chr5:34524822-34525018 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 49, 101

Conread position: 26-284
Cow position: chr5:29743023-29743280 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 168

Conread position: 26-306
Cow position: chr5:3501594-3501873 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 26-306
Cow position: chr5:18249592-18249311 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 78

Conread position: 26-306
Cow position: chr5:46779051-46778772 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 26-306
Cow position: chr5:46792385-46792102 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 170

Conread position: 26-306
Cow position: chr5:64779470-64779753 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-418
Cow position: chr5:3788761-3788340 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 26-418
Cow position: chr5:24101184-24100764 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 252

Conread position: 26-418
Cow position: chr5:46735746-46736164 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 280
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 56, 182

Conread position: 32-414
Cow position: chr5:42507287-42506879 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 245

Conread position: 33-418
Cow position: chr5:10921368-10920960 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 283
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 330

Conread position: 36-305
Cow position: chr5:40759314-40759587 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 74-418
Cow position: chr5:27490424-27490066 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 73

Conread position: 85-422
Cow position: chr5:6152419-6152780 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 116, 0

Conread position: 107-418
Cow position: chr5:4387675-4387343 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 258

Conread position: 119-418
Cow position: chr5:34525635-34525338 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 111

Conread position: 287-415
Cow position: chr5:52436256-52436124 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 288-404
Cow position: chr5:31120958-31121072 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 51

Conread position: 288-414
Cow position: chr5:10841145-10841272 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 54

Conread position: 288-414
Cow position: chr5:13407846-13407716 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 288-415
Cow position: chr5:57001750-57001619 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 288-418
Cow position: chr5:64779757-64779891 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 289-400
Cow position: chr5:71622054-71622169 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 289-412
Cow position: chr5:41066428-41066301 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:444770-444641 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:4755929-4756058 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:6586215-6586341 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 53

Conread position: 289-414
Cow position: chr5:9056909-9056780 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:10774011-10774140 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:11922880-11923009 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:14544055-14544181 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 95

Conread position: 289-414
Cow position: chr5:18120227-18120356 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:23958078-23958207 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:26076954-26077083 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:29031519-29031390 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:31708835-31708705 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:35496424-35496296 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 49

Conread position: 289-414
Cow position: chr5:54928665-54928794 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr5:59062890-59062761 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 296-413
Cow position: chr5:18703897-18703781 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 44

Conread position: 296-418
Cow position: chr5:55993204-55993323 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 297-414
Cow position: chr5:56541276-56541394 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 298-414
Cow position: chr5:27196847-27196963 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 303-418
Cow position: chr5:280422-280307 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-409
Cow position: chr5:27654976-27654875 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 306-411
Cow position: chr5:38661558-38661453 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:5925736-5925844 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:10514049-10514157 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:12730485-12730593 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 96
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:23846892-23846999 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 306-414
Cow position: chr5:30567501-30567393 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 94
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:32775001-32774896 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 306-414
Cow position: chr5:34583861-34583753 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:40130365-40130473 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr5:50605111-50605218 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 306-414
Cow position: chr5:59145598-59145490 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr5:73486696-73486805 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr5:2916654-2916544 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 306-418
Cow position: chr5:7276058-7275946 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr5:10854591-10854701 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 306-418
Cow position: chr5:12680594-12680703 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr5:24644633-24644745 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 37

Conread position: 306-418
Cow position: chr5:27550235-27550347 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 97
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr5:49222271-49222383 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr5:54858871-54858979 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 306-418
Cow position: chr5:58244595-58244705 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 307-414
Cow position: chr5:58190530-58190637 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 307-418
Cow position: chr5:47470013-47469904 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 310-414
Cow position: chr5:4683576-4683680 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-418
Cow position: chr5:18900200-18900095 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 311-418
Cow position: chr5:46003417-46003524 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 313-418
Cow position: chr5:25929468-25929572 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 314-415
Cow position: chr5:27063150-27063251 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 318-412
Cow position: chr5:5105441-5105347 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.