Cow genome map

Conread name: Fet1-UMC-pd20fet-013-h01

Conread position: 1-306
Cow position: chr9:7059434-7059744 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-306
Cow position: chr9:17633106-17632791 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 257

Conread position: 1-306
Cow position: chr9:59196483-59196174 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 152

Conread position: 1-418
Cow position: chr9:1741224-1741655 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 30

Conread position: 5-413
Cow position: chr9:26569888-26569472 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 281

Conread position: 9-418
Cow position: chr9:5609135-5609541 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 257
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 44

Conread position: 12-158
Cow position: chr9:30139972-30140121 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 15-296
Cow position: chr9:2288520-2288805 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 0

Conread position: 15-304
Cow position: chr9:15053269-15053562 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 15-306
Cow position: chr9:10939337-10939042 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 15-306
Cow position: chr9:20941070-20940775 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 15-306
Cow position: chr9:43302606-43302901 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 15-306
Cow position: chr9:44168203-44167913 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 108

Conread position: 15-306
Cow position: chr9:45876133-45875838 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 15-306
Cow position: chr9:48795679-48795974 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 15-330
Cow position: chr9:3389181-3389488 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 12, 87

Conread position: 15-414
Cow position: chr9:38678742-38678320 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 95

Conread position: 20-309
Cow position: chr9:30282402-30282692 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 278

Conread position: 20-418
Cow position: chr9:10567757-10568161 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 130

Conread position: 26-172
Cow position: chr9:11157745-11157895 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 126

Conread position: 26-306
Cow position: chr9:1991934-1992217 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr9:6251872-6251589 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr9:9015675-9015393 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 26-306
Cow position: chr9:16178196-16177913 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr9:17303371-17303648 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 26-306
Cow position: chr9:28658448-28658730 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 66

Conread position: 26-306
Cow position: chr9:30674672-30674389 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 26-306
Cow position: chr9:44203468-44203750 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 78

Conread position: 26-306
Cow position: chr9:59480247-59480530 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 73

Conread position: 26-307
Cow position: chr9:10856621-10856340 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 26-339
Cow position: chr9:22655415-22655100 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 290

Conread position: 26-409
Cow position: chr9:56176372-56175964 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 275
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 26-415
Cow position: chr9:17899978-17900383 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 60, 8

Conread position: 26-418
Cow position: chr9:19156683-19157099 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 287
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 161

Conread position: 33-409
Cow position: chr9:43667236-43666855 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 39

Conread position: 45-418
Cow position: chr9:7005300-7004910 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 105

Conread position: 46-418
Cow position: chr9:3576905-3577302 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 275
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 36, 0

Conread position: 47-415
Cow position: chr9:826357-826721 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 97, 128

Conread position: 48-418
Cow position: chr9:34770737-34770349 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 104-418
Cow position: chr9:44521436-44521121 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 188, 68

Conread position: 106-418
Cow position: chr9:46040772-46041078 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 156, 46

Conread position: 119-414
Cow position: chr9:49513698-49514000 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 112, 61

Conread position: 158-418
Cow position: chr9:42312159-42311876 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 206

Conread position: 283-418
Cow position: chr9:9327722-9327855 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 81

Conread position: 287-418
Cow position: chr9:2630917-2630783 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 72

Conread position: 288-414
Cow position: chr9:128876-129006 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 288-414
Cow position: chr9:1063384-1063514 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 288-414
Cow position: chr9:4941175-4941305 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 288-414
Cow position: chr9:45875834-45875704 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 288-414
Cow position: chr9:50326159-50326030 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 87

Conread position: 288-418
Cow position: chr9:27037425-27037292 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 86

Conread position: 288-418
Cow position: chr9:31091500-31091366 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 289-406
Cow position: chr9:5453566-5453445 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-409
Cow position: chr9:31418344-31418220 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr9:6884643-6884514 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr9:10644380-10644251 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr9:30829069-30828941 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 123

Conread position: 289-414
Cow position: chr9:34240786-34240914 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 67

Conread position: 289-414
Cow position: chr9:48795979-48796108 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 289-414
Cow position: chr9:52525471-52525342 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-415
Cow position: chr9:10856332-10856203 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 115

Conread position: 289-418
Cow position: chr9:14044936-14044808 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 51

Conread position: 289-418
Cow position: chr9:30674384-30674251 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 289-418
Cow position: chr9:56302126-56302259 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 290-414
Cow position: chr9:3310931-3310807 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 7, 92

Conread position: 296-418
Cow position: chr9:28356869-28356747 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 37

Conread position: 299-414
Cow position: chr9:28680275-28680160 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 301-423
Cow position: chr9:18834029-18834150 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 302-418
Cow position: chr9:60461437-60461554 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 304-412
Cow position: chr9:10746377-10746486 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 306-412
Cow position: chr9:24422656-24422762 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-413
Cow position: chr9:47044263-47044156 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 93
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr9:2680867-2680759 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr9:2872644-2872536 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr9:5534925-5535031 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 306-414
Cow position: chr9:26738306-26738200 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 32

Conread position: 306-414
Cow position: chr9:37175097-37174989 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-414
Cow position: chr9:64012928-64013036 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr9:5627109-5627000 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr9:12726742-12726633 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr9:33593431-33593322 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 306-415
Cow position: chr9:51179879-51179988 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:1994117-1994226 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr9:7059770-7059882 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:9015367-9015255 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:10939016-10938907 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr9:17313797-17313685 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 101
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:18507534-18507643 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr9:21411602-21411493 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr9:43302927-43303038 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 306-418
Cow position: chr9:47005034-47004922 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:59196148-59196039 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 306-418
Cow position: chr9:59480556-59480668 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-418
Cow position: chr9:59538397-59538285 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-419
Cow position: chr9:32971670-32971557 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 306-419
Cow position: chr9:37160521-37160631 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 307-414
Cow position: chr9:12250410-12250303 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 307-418
Cow position: chr9:28024102-28023991 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 307-423
Cow position: chr9:8096576-8096462 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 112, 11

Conread position: 318-413
Cow position: chr9:5861580-5861675 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 324-415
Cow position: chr9:20780175-20780084 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 83
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.