Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-268
Cow position: chr1:39069164-39069448 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 1-271
Cow position: chr1:55357499-55357766 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 170, 27

Conread position: 1-276
Cow position: chr1:45289086-45289352 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 47

Conread position: 1-276
Cow position: chr1:75250022-75249752 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 51

Conread position: 2-268
Cow position: chr1:84240685-84240429 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 167, 17

Conread position: 2-269
Cow position: chr1:61724239-61724497 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 65

Conread position: 2-270
Cow position: chr1:95176721-95176456 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-271
Cow position: chr1:3963405-3963141 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 117

Conread position: 2-271
Cow position: chr1:92370575-92370841 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 167, 17

Conread position: 2-276
Cow position: chr1:24561719-24561980 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 189, 17

Conread position: 2-276
Cow position: chr1:43352865-43353134 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 17

Conread position: 2-276
Cow position: chr1:71691600-71691329 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 201

Conread position: 2-276
Cow position: chr1:72012018-72012291 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 17

Conread position: 2-276
Cow position: chr1:82936796-82937069 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 207

Conread position: 2-281
Cow position: chr1:71797114-71797385 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-285
Cow position: chr1:81569249-81569530 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 202

Conread position: 3-261
Cow position: chr1:95017728-95017991 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 169, 69

Conread position: 3-267
Cow position: chr1:73522359-73522618 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 24

Conread position: 3-270
Cow position: chr1:60032813-60033081 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 208

Conread position: 3-271
Cow position: chr1:24235733-24235996 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 178

Conread position: 3-271
Cow position: chr1:44164863-44164596 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 112, 16

Conread position: 3-271
Cow position: chr1:58439261-58439516 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 194, 36

Conread position: 3-271
Cow position: chr1:101792313-101792568 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 59

Conread position: 3-276
Cow position: chr1:54199595-54199864 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 204

Conread position: 3-276
Cow position: chr1:60120213-60119939 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 24

Conread position: 3-276
Cow position: chr1:73756878-73756607 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 86

Conread position: 3-276
Cow position: chr1:82378579-82378305 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 16

Conread position: 3-293
Cow position: chr1:28988907-28989203 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 87

Conread position: 4-226
Cow position: chr1:101634485-101634266 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 59

Conread position: 4-271
Cow position: chr1:89344693-89344431 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 144

Conread position: 4-271
Cow position: chr1:95499712-95499981 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 16

Conread position: 4-276
Cow position: chr1:46885878-46885607 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 201

Conread position: 4-276
Cow position: chr1:86511945-86511678 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 140

Conread position: 6-291
Cow position: chr1:37309724-37310015 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 6-318
Cow position: chr1:69941186-69941489 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 54

Conread position: 7-270
Cow position: chr1:28877137-28876877 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 200

Conread position: 7-270
Cow position: chr1:32108865-32108604 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 183, 200

Conread position: 7-270
Cow position: chr1:76748353-76748613 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 200

Conread position: 7-270
Cow position: chr1:91888206-91888466 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 200

Conread position: 7-317
Cow position: chr1:50656733-50657041 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 201

Conread position: 9-204
Cow position: chr1:18023532-18023723 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 9-244
Cow position: chr1:1801922-1801692 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 182, 10

Conread position: 9-262
Cow position: chr1:76019899-76020150 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 197

Conread position: 9-268
Cow position: chr1:67821431-67821694 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 169

Conread position: 9-270
Cow position: chr1:52354636-52354892 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 123

Conread position: 9-271
Cow position: chr1:42713802-42714060 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 193

Conread position: 9-271
Cow position: chr1:47791035-47791295 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 149

Conread position: 9-271
Cow position: chr1:62597184-62597442 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr1:66368355-66368613 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr1:78920970-78921228 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 194

Conread position: 9-271
Cow position: chr1:91674270-91674012 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-272
Cow position: chr1:61330925-61331183 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-276
Cow position: chr1:21091299-21091036 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 194

Conread position: 9-276
Cow position: chr1:31720266-31720003 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 90

Conread position: 9-276
Cow position: chr1:63049605-63049341 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 198

Conread position: 9-276
Cow position: chr1:89742233-89742496 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 167

Conread position: 12-276
Cow position: chr1:99105106-99105373 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 201

Conread position: 12-279
Cow position: chr1:7752186-7751919 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 135, 30

Conread position: 13-270
Cow position: chr1:21506507-21506765 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 138

Conread position: 16-276
Cow position: chr1:24445955-24446209 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 22-271
Cow position: chr1:67008966-67009215 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 168, 38

Conread position: 25-276
Cow position: chr1:95071471-95071221 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 184

Conread position: 26-276
Cow position: chr1:11728955-11728703 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 131, 187

Conread position: 30-276
Cow position: chr1:93527163-93526926 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 36

Conread position: 31-276
Cow position: chr1:81363282-81363047 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 196
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 71, 29

Conread position: 34-270
Cow position: chr1:19883594-19883837 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 119

Conread position: 38-276
Cow position: chr1:100537387-100537156 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 153, 23

Conread position: 42-271
Cow position: chr1:3924085-3924310 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 24

Conread position: 42-271
Cow position: chr1:52507616-52507841 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 164

Conread position: 42-271
Cow position: chr1:53613451-53613686 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 71, 174

Conread position: 42-286
Cow position: chr1:69678635-69678875 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 165

Conread position: 44-271
Cow position: chr1:66145704-66145481 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 184, 158

Conread position: 47-271
Cow position: chr1:83583216-83583428 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 143, 52

Conread position: 49-277
Cow position: chr1:59247791-59248021 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 123, 89

Conread position: 52-271
Cow position: chr1:56618960-56619165 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 138, 86

Conread position: 52-276
Cow position: chr1:43448043-43448259 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 92, 124

Conread position: 55-290
Cow position: chr1:102784514-102784284 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 135, 122

Conread position: 63-276
Cow position: chr1:54732719-54732925 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 127, 59

Conread position: 86-288
Cow position: chr1:26838880-26838680 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 121

Conread position: 87-271
Cow position: chr1:16797142-16797323 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 120

Conread position: 113-268
Cow position: chr1:81579275-81579425 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 39

Conread position: 122-271
Cow position: chr1:68845789-68845935 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 68, 85

Conread position: 130-276
Cow position: chr1:732364-732506 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 77

Conread position: 133-270
Cow position: chr1:47543071-47543205 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 75

Conread position: 138-268
Cow position: chr1:15049783-15049656 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 69

Show alignments to all cow chromosomes.