Cow genome map
Conread name: | Fet1-UMC-pd20fet-017-h10 |
Conread position: | 1-263 |
Cow position: | chr11:54134484-54134748 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 205 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 37, 62 |
Conread position: | 1-333 |
Cow position: | chr11:8840979-8841314 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 234 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 50, 215 |
Conread position: | 2-268 |
Cow position: | chr11:10992040-10991763 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 206 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 50, 219 |
Conread position: | 2-268 |
Cow position: | chr11:35580014-35579753 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 50 |
Conread position: | 2-270 |
Cow position: | chr11:8827540-8827279 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 52 |
Conread position: | 2-271 |
Cow position: | chr11:16795391-16795653 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 50 |
Conread position: | 2-271 |
Cow position: | chr11:52297463-52297718 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 203 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 141, 68 |
Conread position: | 2-271 |
Cow position: | chr11:56751625-56751885 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 210 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 113, 17 |
Conread position: | 2-276 |
Cow position: | chr11:15373398-15373127 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 140 |
Conread position: | 2-276 |
Cow position: | chr11:25386831-25386561 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 185, 179 |
Conread position: | 2-276 |
Cow position: | chr11:33349941-33350210 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 143 |
Conread position: | 2-276 |
Cow position: | chr11:40467363-40467632 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 115 |
Conread position: | 2-276 |
Cow position: | chr11:48659452-48659169 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 209 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 188, 28 |
Conread position: | 2-276 |
Cow position: | chr11:50153058-50153324 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 20 |
Conread position: | 2-276 |
Cow position: | chr11:60515205-60515475 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 189, 202 |
Conread position: | 2-276 |
Cow position: | chr11:64048081-64047810 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 205 |
Conread position: | 2-276 |
Cow position: | chr11:77705526-77705258 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 207 |
Conread position: | 2-287 |
Cow position: | chr11:27326245-27325968 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 98 |
Conread position: | 3-262 |
Cow position: | chr11:11858441-11858176 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 189 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 28, 86 |
Conread position: | 3-271 |
Cow position: | chr11:19890644-19890379 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 84 |
Conread position: | 3-271 |
Cow position: | chr11:35920015-35920284 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 197 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 121, 89 |
Conread position: | 3-271 |
Cow position: | chr11:61846245-61846515 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 187 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 13, 206 |
Conread position: | 3-276 |
Cow position: | chr11:1032048-1031775 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 197 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 157, 54 |
Conread position: | 3-276 |
Cow position: | chr11:3393451-3393720 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 31 |
Conread position: | 4-204 |
Cow position: | chr11:40940-40740 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 162 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 162 |
Conread position: | 4-268 |
Cow position: | chr11:37292615-37292354 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 205 |
Conread position: | 4-270 |
Cow position: | chr11:13061465-13061717 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 38 |
Conread position: | 4-271 |
Cow position: | chr11:7873921-7873655 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 204 |
Conread position: | 4-271 |
Cow position: | chr11:77029926-77029661 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 190 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 167, 15 |
Conread position: | 4-276 |
Cow position: | chr11:42292077-42292345 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 60 |
Conread position: | 5-270 |
Cow position: | chr11:40771939-40772200 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 229, 201 |
Conread position: | 5-270 |
Cow position: | chr11:50191458-50191722 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 187 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 72, 39 |
Conread position: | 6-276 |
Cow position: | chr11:48649711-48649438 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 73 |
Conread position: | 6-319 |
Cow position: | chr11:48168895-48169214 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 225 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 33, 21 |
Conread position: | 9-212 |
Cow position: | chr11:63149672-63149874 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 158 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 197, 0 |
Conread position: | 9-270 |
Cow position: | chr11:14425897-14426162 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 193 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 181, 0 |
Conread position: | 9-270 |
Cow position: | chr11:49170806-49171058 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 192 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 181, 126 |
Conread position: | 9-271 |
Cow position: | chr11:9165695-9165957 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 188 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 74, 11 |
Conread position: | 9-271 |
Cow position: | chr11:41314999-41314739 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 196 |
Conread position: | 9-276 |
Cow position: | chr11:25184673-25184410 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 191 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 31, 22 |
Conread position: | 9-276 |
Cow position: | chr11:72008190-72007931 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 195 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 165, 27 |
Conread position: | 11-276 |
Cow position: | chr11:38638874-38638610 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 204 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 161, 49 |
Conread position: | 12-271 |
Cow position: | chr11:58614411-58614144 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 205 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 41, 144 |
Conread position: | 13-251 |
Cow position: | chr11:32198690-32198458 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 0 |
Conread position: | 13-270 |
Cow position: | chr11:26551168-26550914 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 194 |
Conread position: | 14-268 |
Cow position: | chr11:54104764-54105014 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 176, 85 |
Conread position: | 28-267 |
Cow position: | chr11:45647101-45647339 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 178 |
Conread position: | 30-276 |
Cow position: | chr11:9065894-9066148 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 174 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 102, 44 |
Conread position: | 33-270 |
Cow position: | chr11:53773344-53773111 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 174 |
Conread position: | 33-271 |
Cow position: | chr11:83043879-83044113 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 183 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 157, 37 |
Conread position: | 36-276 |
Cow position: | chr11:29916275-29916038 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 184 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 27, 47 |
Conread position: | 37-276 |
Cow position: | chr11:39152410-39152177 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 181 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 153, 23 |
Conread position: | 38-276 |
Cow position: | chr11:20493100-20493340 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 173 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 67, 84 |
Conread position: | 40-268 |
Cow position: | chr11:55761512-55761286 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 182 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 131, 20 |
Conread position: | 42-276 |
Cow position: | chr11:48232160-48231934 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 176 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 148, 32 |
Conread position: | 43-267 |
Cow position: | chr11:42003277-42003500 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 175 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 10, 157 |
Conread position: | 43-270 |
Cow position: | chr11:16506713-16506935 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 165 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 43-271 |
Cow position: | chr11:67246526-67246301 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 178 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 129, 51 |
Conread position: | 43-276 |
Cow position: | chr11:54264705-54264468 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 166 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 26, 171 |
Conread position: | 44-267 |
Cow position: | chr11:2281773-2281999 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 170 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 128, 169 |
Conread position: | 60-265 |
Cow position: | chr11:58817241-58817037 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 154 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 60-276 |
Cow position: | chr11:83323301-83323091 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 11 |
Conread position: | 63-229 |
Cow position: | chr11:37536848-37536681 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 128 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 143, 0 |
Conread position: | 63-268 |
Cow position: | chr11:63166485-63166687 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 162 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 78, 59 |
Conread position: | 65-270 |
Cow position: | chr11:28382308-28382105 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 143 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 112, 144 |
Conread position: | 69-276 |
Cow position: | chr11:56522228-56522436 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 161 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 98, 30 |
Conread position: | 82-256 |
Cow position: | chr11:47608039-47607872 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 137 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 108, 116 |
Conread position: | 121-271 |
Cow position: | chr11:19112690-19112841 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 121 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 56, 45 |
Show alignments to all cow chromosomes.