Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-263
Cow position: chr11:54134484-54134748 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 37, 62

Conread position: 1-333
Cow position: chr11:8840979-8841314 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 234
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 215

Conread position: 2-268
Cow position: chr11:10992040-10991763 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 50, 219

Conread position: 2-268
Cow position: chr11:35580014-35579753 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 50

Conread position: 2-270
Cow position: chr11:8827540-8827279 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 52

Conread position: 2-271
Cow position: chr11:16795391-16795653 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 50

Conread position: 2-271
Cow position: chr11:52297463-52297718 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 141, 68

Conread position: 2-271
Cow position: chr11:56751625-56751885 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 113, 17

Conread position: 2-276
Cow position: chr11:15373398-15373127 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 140

Conread position: 2-276
Cow position: chr11:25386831-25386561 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 179

Conread position: 2-276
Cow position: chr11:33349941-33350210 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 143

Conread position: 2-276
Cow position: chr11:40467363-40467632 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 115

Conread position: 2-276
Cow position: chr11:48659452-48659169 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 188, 28

Conread position: 2-276
Cow position: chr11:50153058-50153324 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 20

Conread position: 2-276
Cow position: chr11:60515205-60515475 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 202

Conread position: 2-276
Cow position: chr11:64048081-64047810 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr11:77705526-77705258 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 207

Conread position: 2-287
Cow position: chr11:27326245-27325968 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 98

Conread position: 3-262
Cow position: chr11:11858441-11858176 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 86

Conread position: 3-271
Cow position: chr11:19890644-19890379 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 84

Conread position: 3-271
Cow position: chr11:35920015-35920284 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 121, 89

Conread position: 3-271
Cow position: chr11:61846245-61846515 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 206

Conread position: 3-276
Cow position: chr11:1032048-1031775 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 157, 54

Conread position: 3-276
Cow position: chr11:3393451-3393720 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 31

Conread position: 4-204
Cow position: chr11:40940-40740 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 162

Conread position: 4-268
Cow position: chr11:37292615-37292354 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 205

Conread position: 4-270
Cow position: chr11:13061465-13061717 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 38

Conread position: 4-271
Cow position: chr11:7873921-7873655 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 204

Conread position: 4-271
Cow position: chr11:77029926-77029661 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 167, 15

Conread position: 4-276
Cow position: chr11:42292077-42292345 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 60

Conread position: 5-270
Cow position: chr11:40771939-40772200 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 201

Conread position: 5-270
Cow position: chr11:50191458-50191722 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 39

Conread position: 6-276
Cow position: chr11:48649711-48649438 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 73

Conread position: 6-319
Cow position: chr11:48168895-48169214 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 21

Conread position: 9-212
Cow position: chr11:63149672-63149874 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 197, 0

Conread position: 9-270
Cow position: chr11:14425897-14426162 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 181, 0

Conread position: 9-270
Cow position: chr11:49170806-49171058 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 181, 126

Conread position: 9-271
Cow position: chr11:9165695-9165957 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 74, 11

Conread position: 9-271
Cow position: chr11:41314999-41314739 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 196

Conread position: 9-276
Cow position: chr11:25184673-25184410 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 22

Conread position: 9-276
Cow position: chr11:72008190-72007931 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 165, 27

Conread position: 11-276
Cow position: chr11:38638874-38638610 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 161, 49

Conread position: 12-271
Cow position: chr11:58614411-58614144 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 41, 144

Conread position: 13-251
Cow position: chr11:32198690-32198458 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 13-270
Cow position: chr11:26551168-26550914 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 194

Conread position: 14-268
Cow position: chr11:54104764-54105014 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 85

Conread position: 28-267
Cow position: chr11:45647101-45647339 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 178

Conread position: 30-276
Cow position: chr11:9065894-9066148 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 44

Conread position: 33-270
Cow position: chr11:53773344-53773111 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 174

Conread position: 33-271
Cow position: chr11:83043879-83044113 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 157, 37

Conread position: 36-276
Cow position: chr11:29916275-29916038 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 47

Conread position: 37-276
Cow position: chr11:39152410-39152177 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 153, 23

Conread position: 38-276
Cow position: chr11:20493100-20493340 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 84

Conread position: 40-268
Cow position: chr11:55761512-55761286 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 131, 20

Conread position: 42-276
Cow position: chr11:48232160-48231934 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 148, 32

Conread position: 43-267
Cow position: chr11:42003277-42003500 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 10, 157

Conread position: 43-270
Cow position: chr11:16506713-16506935 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 40, 0

Conread position: 43-271
Cow position: chr11:67246526-67246301 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 129, 51

Conread position: 43-276
Cow position: chr11:54264705-54264468 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 171

Conread position: 44-267
Cow position: chr11:2281773-2281999 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 128, 169

Conread position: 60-265
Cow position: chr11:58817241-58817037 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 10

Conread position: 60-276
Cow position: chr11:83323301-83323091 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 11

Conread position: 63-229
Cow position: chr11:37536848-37536681 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 143, 0

Conread position: 63-268
Cow position: chr11:63166485-63166687 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 78, 59

Conread position: 65-270
Cow position: chr11:28382308-28382105 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 144

Conread position: 69-276
Cow position: chr11:56522228-56522436 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 30

Conread position: 82-256
Cow position: chr11:47608039-47607872 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 108, 116

Conread position: 121-271
Cow position: chr11:19112690-19112841 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 45

Show alignments to all cow chromosomes.