Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-265 |
| Cow position: | chr12:9414027-9414286 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 22 |
| Conread position: | 2-265 |
| Cow position: | chr12:40807137-40806878 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 130 |
| Conread position: | 2-270 |
| Cow position: | chr12:20169643-20169906 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 97 |
| Conread position: | 2-270 |
| Cow position: | chr12:32786250-32786510 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 2-271 |
| Cow position: | chr12:4593836-4593570 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 201 |
| Conread position: | 2-271 |
| Cow position: | chr12:9143134-9142869 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 2-271 |
| Cow position: | chr12:17007938-17007674 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 2-271 |
| Cow position: | chr12:26777412-26777676 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-271 |
| Cow position: | chr12:44274106-44274364 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 141, 58 |
| Conread position: | 2-276 |
| Cow position: | chr12:11583145-11582871 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 2-276 |
| Cow position: | chr12:18421186-18421456 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr12:20316766-20317036 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr12:21496923-21497198 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 167, 15 |
| Conread position: | 2-276 |
| Cow position: | chr12:22341059-22340792 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 33 |
| Conread position: | 2-276 |
| Cow position: | chr12:24440553-24440282 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 199 |
| Conread position: | 2-276 |
| Cow position: | chr12:28572443-28572173 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 22 |
| Conread position: | 3-270 |
| Cow position: | chr12:17982370-17982111 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 3-270 |
| Cow position: | chr12:38111469-38111207 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 3-272 |
| Cow position: | chr12:1475755-1476019 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 187, 155 |
| Conread position: | 3-276 |
| Cow position: | chr12:3070850-3070581 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 187, 162 |
| Conread position: | 3-276 |
| Cow position: | chr12:25606430-25606161 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 160, 19 |
| Conread position: | 3-276 |
| Cow position: | chr12:31261612-31261334 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 212 |
| Conread position: | 3-276 |
| Cow position: | chr12:40428582-40428856 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 160, 69 |
| Conread position: | 7-270 |
| Cow position: | chr12:8172907-8172633 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 7-270 |
| Cow position: | chr12:11102239-11101976 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 203 |
| Conread position: | 7-271 |
| Cow position: | chr12:21212770-21212510 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 201 |
| Conread position: | 7-314 |
| Cow position: | chr12:21250327-21250629 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 183, 200 |
| Conread position: | 9-197 |
| Cow position: | chr12:25878746-25878558 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-265 |
| Cow position: | chr12:20654921-20655185 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 139, 51 |
| Conread position: | 9-270 |
| Cow position: | chr12:21075798-21075544 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 9-271 |
| Cow position: | chr12:379464-379204 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 193 |
| Conread position: | 9-271 |
| Cow position: | chr12:5776593-5776851 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 193 |
| Conread position: | 9-271 |
| Cow position: | chr12:5813457-5813199 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 198 |
| Conread position: | 9-271 |
| Cow position: | chr12:31835635-31835376 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr12:36446369-36446112 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 108 |
| Conread position: | 9-271 |
| Cow position: | chr12:44758409-44758150 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-276 |
| Cow position: | chr12:35310939-35311210 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 10-276 |
| Cow position: | chr12:25357496-25357768 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 11-271 |
| Cow position: | chr12:4718812-4718557 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 9 |
| Conread position: | 13-271 |
| Cow position: | chr12:31026838-31027093 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 194 |
| Conread position: | 17-276 |
| Cow position: | chr12:18943924-18944183 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 100 |
| Conread position: | 18-271 |
| Cow position: | chr12:14567847-14568097 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 215 |
| Conread position: | 29-276 |
| Cow position: | chr12:5905486-5905246 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 31 |
| Conread position: | 30-270 |
| Cow position: | chr12:10932052-10931811 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 160, 142 |
| Conread position: | 32-290 |
| Cow position: | chr12:15821681-15821429 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 34-268 |
| Cow position: | chr12:4518532-4518766 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 38-265 |
| Cow position: | chr12:6440900-6441130 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 38-265 |
| Cow position: | chr12:19972991-19972765 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 93 |
| Conread position: | 40-266 |
| Cow position: | chr12:759352-759129 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 137, 178 |
| Conread position: | 41-271 |
| Cow position: | chr12:32918281-32918054 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 149, 163 |
| Conread position: | 42-276 |
| Cow position: | chr12:29842224-29841987 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 49-276 |
| Cow position: | chr12:20849356-20849126 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 103, 190 |
| Conread position: | 50-276 |
| Cow position: | chr12:3950642-3950864 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 122, 158 |
| Conread position: | 54-264 |
| Cow position: | chr12:26316935-26316730 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 176, 24 |
| Conread position: | 54-276 |
| Cow position: | chr12:17663901-17663676 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 110, 160 |
| Conread position: | 62-270 |
| Cow position: | chr12:27365295-27365086 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 66-203 |
| Cow position: | chr12:16327218-16327081 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 66-271 |
| Cow position: | chr12:8718442-8718642 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 115 |
| Conread position: | 79-276 |
| Cow position: | chr12:10939275-10939086 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 87-265 |
| Cow position: | chr12:43103728-43103549 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 103-275 |
| Cow position: | chr12:5166285-5166114 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 119-270 |
| Cow position: | chr12:28789550-28789403 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 88 |
Show alignments to all cow chromosomes.