Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 1-270 |
| Cow position: | chr13:2414231-2414495 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 1-270 |
| Cow position: | chr13:52859237-52859486 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 2-204 |
| Cow position: | chr13:61170509-61170316 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-265 |
| Cow position: | chr13:21988896-21988640 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 58 |
| Conread position: | 2-265 |
| Cow position: | chr13:34263167-34262917 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 188, 32 |
| Conread position: | 2-271 |
| Cow position: | chr13:20563203-20563463 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 2-271 |
| Cow position: | chr13:32826201-32825935 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-271 |
| Cow position: | chr13:57493977-57493712 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-271 |
| Cow position: | chr13:60508910-60508651 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 2-276 |
| Cow position: | chr13:1011538-1011809 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr13:1155502-1155232 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr13:19178482-19178758 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 50 |
| Conread position: | 2-276 |
| Cow position: | chr13:34052395-34052120 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 17 |
| Conread position: | 2-276 |
| Cow position: | chr13:40989285-40989552 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 15 |
| Conread position: | 2-277 |
| Cow position: | chr13:25434923-25434646 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 3-265 |
| Cow position: | chr13:18908245-18908502 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 3-271 |
| Cow position: | chr13:6651055-6650788 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 207 |
| Conread position: | 3-271 |
| Cow position: | chr13:17800279-17800545 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 3-271 |
| Cow position: | chr13:36717121-36716856 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 165, 81 |
| Conread position: | 3-276 |
| Cow position: | chr13:311637-311909 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 206 |
| Conread position: | 3-276 |
| Cow position: | chr13:14717131-14716857 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 24, 209 |
| Conread position: | 3-276 |
| Cow position: | chr13:15167025-15167294 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 51 |
| Conread position: | 3-276 |
| Cow position: | chr13:15869326-15869600 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 3-276 |
| Cow position: | chr13:33975883-33976145 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 188, 63 |
| Conread position: | 4-271 |
| Cow position: | chr13:36346200-36346475 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 172, 18 |
| Conread position: | 6-276 |
| Cow position: | chr13:43762378-43762640 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 7-270 |
| Cow position: | chr13:3162709-3162972 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 13 |
| Conread position: | 8-271 |
| Cow position: | chr13:42086356-42086614 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 149 |
| Conread position: | 9-268 |
| Cow position: | chr13:57769810-57769556 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 181, 44 |
| Conread position: | 9-271 |
| Cow position: | chr13:12389604-12389859 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 27 |
| Conread position: | 9-271 |
| Cow position: | chr13:13220737-13220479 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 14 |
| Conread position: | 9-271 |
| Cow position: | chr13:15538209-15538467 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 195 |
| Conread position: | 9-271 |
| Cow position: | chr13:17567773-17567517 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 15 |
| Conread position: | 9-271 |
| Cow position: | chr13:21836528-21836784 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 128 |
| Conread position: | 9-271 |
| Cow position: | chr13:32081654-32081395 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr13:38574365-38574624 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr13:42215340-42215600 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 199 |
| Conread position: | 9-271 |
| Cow position: | chr13:45353255-45353502 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 135, 83 |
| Conread position: | 9-271 |
| Cow position: | chr13:51528233-51527975 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 98 |
| Conread position: | 9-271 |
| Cow position: | chr13:56527109-56526862 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 181, 151 |
| Conread position: | 9-273 |
| Cow position: | chr13:26079665-26079924 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 156, 43 |
| Conread position: | 9-276 |
| Cow position: | chr13:971685-971419 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 200 |
| Conread position: | 9-276 |
| Cow position: | chr13:34375468-34375732 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-317 |
| Cow position: | chr13:31990658-31990343 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 273 |
| Conread position: | 11-271 |
| Cow position: | chr13:24109298-24109556 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 12-273 |
| Cow position: | chr13:19396568-19396826 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 178, 104 |
| Conread position: | 13-270 |
| Cow position: | chr13:20561317-20561568 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 177, 29 |
| Conread position: | 13-271 |
| Cow position: | chr13:15872666-15872919 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 143 |
| Conread position: | 15-271 |
| Cow position: | chr13:32980469-32980722 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 193 |
| Conread position: | 23-204 |
| Cow position: | chr13:41918939-41918758 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 151, 168 |
| Conread position: | 30-270 |
| Cow position: | chr13:2558276-2558040 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 160, 177 |
| Conread position: | 38-271 |
| Cow position: | chr13:52922348-52922573 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 38-276 |
| Cow position: | chr13:6539926-6539689 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 38-293 |
| Cow position: | chr13:11252373-11252624 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 135, 14 |
| Conread position: | 40-270 |
| Cow position: | chr13:31343598-31343370 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 40-271 |
| Cow position: | chr13:24060086-24059859 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 42-270 |
| Cow position: | chr13:11821562-11821791 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 116 |
| Conread position: | 42-276 |
| Cow position: | chr13:9734191-9734426 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 42-283 |
| Cow position: | chr13:50681514-50681278 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 148, 14 |
| Conread position: | 43-276 |
| Cow position: | chr13:58719256-58719028 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 45-276 |
| Cow position: | chr13:37521101-37520873 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 46-276 |
| Cow position: | chr13:46182025-46182249 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 145, 42 |
| Conread position: | 48-229 |
| Cow position: | chr13:34299313-34299134 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 12 |
| Conread position: | 48-276 |
| Cow position: | chr13:53574252-53574476 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 182, 9 |
| Conread position: | 49-328 |
| Cow position: | chr13:44323232-44323506 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 122 |
| Conread position: | 50-276 |
| Cow position: | chr13:8960833-8961055 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 139, 107 |
| Conread position: | 83-271 |
| Cow position: | chr13:19393541-19393725 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 99-271 |
| Cow position: | chr13:16973132-16972963 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 134 |
| Conread position: | 106-276 |
| Cow position: | chr13:34112630-34112795 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 123-271 |
| Cow position: | chr13:32221218-32221363 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 84 |
Show alignments to all cow chromosomes.