Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-265 |
| Cow position: | chr14:33337932-33337662 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 57, 215 |
| Conread position: | 2-271 |
| Cow position: | chr14:18904344-18904074 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 145 |
| Conread position: | 2-271 |
| Cow position: | chr14:44382936-44382668 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 207 |
| Conread position: | 2-276 |
| Cow position: | chr14:8754590-8754862 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 2-276 |
| Cow position: | chr14:17755822-17756092 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 206 |
| Conread position: | 2-276 |
| Cow position: | chr14:19189303-19189573 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 40 |
| Conread position: | 2-276 |
| Cow position: | chr14:21534776-21534512 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 23 |
| Conread position: | 2-276 |
| Cow position: | chr14:22381291-22381018 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 206 |
| Conread position: | 2-276 |
| Cow position: | chr14:24417147-24417420 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 207 |
| Conread position: | 2-276 |
| Cow position: | chr14:25682209-25682486 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 196 |
| Conread position: | 2-276 |
| Cow position: | chr14:28795940-28796203 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 170, 58 |
| Conread position: | 2-276 |
| Cow position: | chr14:41132425-41132168 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 188, 51 |
| Conread position: | 2-276 |
| Cow position: | chr14:46735576-46735851 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 2-283 |
| Cow position: | chr14:44237436-44237158 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 3-270 |
| Cow position: | chr14:8488450-8488720 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 3-270 |
| Cow position: | chr14:30664266-30664533 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 208 |
| Conread position: | 3-271 |
| Cow position: | chr14:20826956-20827217 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 57 |
| Conread position: | 3-274 |
| Cow position: | chr14:22074757-22074487 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 3-276 |
| Cow position: | chr14:18448744-18448472 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 3-276 |
| Cow position: | chr14:41454268-41453995 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 3-280 |
| Cow position: | chr14:14245587-14245862 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 3-283 |
| Cow position: | chr14:14326839-14326565 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 96 |
| Conread position: | 3-283 |
| Cow position: | chr14:36109183-36109461 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 4-276 |
| Cow position: | chr14:26160654-26160381 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 168, 32 |
| Conread position: | 5-270 |
| Cow position: | chr14:5519369-5519626 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 6-271 |
| Cow position: | chr14:20640353-20640098 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 201 |
| Conread position: | 7-270 |
| Cow position: | chr14:13309379-13309121 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 92 |
| Conread position: | 7-276 |
| Cow position: | chr14:38239836-38240102 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 8-269 |
| Cow position: | chr14:45512764-45513021 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 52 |
| Conread position: | 9-201 |
| Cow position: | chr14:12903965-12903773 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 181, 168 |
| Conread position: | 9-270 |
| Cow position: | chr14:21087198-21087456 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 140 |
| Conread position: | 9-270 |
| Cow position: | chr14:44026170-44026426 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 10 |
| Conread position: | 9-270 |
| Cow position: | chr14:44742116-44741857 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 199 |
| Conread position: | 9-270 |
| Cow position: | chr14:48250809-48251066 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 202 |
| Conread position: | 9-271 |
| Cow position: | chr14:9448895-9449158 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 229 |
| Conread position: | 9-271 |
| Cow position: | chr14:12857860-12858118 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr14:14082036-14082295 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr14:18526688-18526946 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 143 |
| Conread position: | 9-273 |
| Cow position: | chr14:9033403-9033664 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-276 |
| Cow position: | chr14:23055876-23056139 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 9-276 |
| Cow position: | chr14:31156473-31156209 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-277 |
| Cow position: | chr14:48492514-48492258 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 18-276 |
| Cow position: | chr14:27865852-27865602 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 173, 29 |
| Conread position: | 19-271 |
| Cow position: | chr14:445679-445910 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 21-276 |
| Cow position: | chr14:39003473-39003733 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 189 |
| Conread position: | 30-270 |
| Cow position: | chr14:48828846-48828610 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 30-276 |
| Cow position: | chr14:32470942-32471180 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 160, 6 |
| Conread position: | 32-267 |
| Cow position: | chr14:29699442-29699206 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 140, 67 |
| Conread position: | 38-270 |
| Cow position: | chr14:23153877-23153654 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 38-291 |
| Cow position: | chr14:36709478-36709722 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 40-276 |
| Cow position: | chr14:30758589-30758826 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 171 |
| Conread position: | 40-276 |
| Cow position: | chr14:34984136-34984375 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 134, 173 |
| Conread position: | 40-276 |
| Cow position: | chr14:40999383-40999626 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 177 |
| Conread position: | 42-271 |
| Cow position: | chr14:3437572-3437807 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 167 |
| Conread position: | 42-276 |
| Cow position: | chr14:4991559-4991796 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 125, 172 |
| Conread position: | 42-276 |
| Cow position: | chr14:46331010-46331241 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 148, 166 |
| Conread position: | 42-296 |
| Cow position: | chr14:35700815-35701070 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 43-276 |
| Cow position: | chr14:17899777-17900011 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 148, 195 |
| Conread position: | 43-276 |
| Cow position: | chr14:38379588-38379818 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 147, 187 |
| Conread position: | 43-276 |
| Cow position: | chr14:41488189-41488410 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 44-260 |
| Cow position: | chr14:5836240-5836454 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 44-271 |
| Cow position: | chr14:23308059-23308277 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 45-262 |
| Cow position: | chr14:35604695-35604477 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 120, 167 |
| Conread position: | 49-271 |
| Cow position: | chr14:16805540-16805758 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 141, 95 |
| Conread position: | 49-273 |
| Cow position: | chr14:47043534-47043308 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 49-276 |
| Cow position: | chr14:28257272-28257042 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 159 |
| Conread position: | 63-276 |
| Cow position: | chr14:44847542-44847327 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 66-276 |
| Cow position: | chr14:30094364-30094565 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 67-276 |
| Cow position: | chr14:19407488-19407276 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 148 |
| Conread position: | 70-268 |
| Cow position: | chr14:47591564-47591362 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 144 |
| Conread position: | 84-271 |
| Cow position: | chr14:17219882-17219696 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 149 |
| Conread position: | 99-271 |
| Cow position: | chr14:17525905-17525742 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 110-270 |
| Cow position: | chr14:35018446-35018289 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 97 |
| Conread position: | 129-271 |
| Cow position: | chr14:2832716-2832575 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 27 |
Show alignments to all cow chromosomes.