Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 1-264 |
| Cow position: | chr15:13285343-13285616 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 1-276 |
| Cow position: | chr15:1602617-1602348 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 1-276 |
| Cow position: | chr15:36422965-36423228 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 2-261 |
| Cow position: | chr15:52748491-52748741 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-271 |
| Cow position: | chr15:6321290-6321036 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 2-271 |
| Cow position: | chr15:21910438-21910688 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 93 |
| Conread position: | 2-271 |
| Cow position: | chr15:26079061-26078792 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 205 |
| Conread position: | 2-272 |
| Cow position: | chr15:32226576-32226314 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 57 |
| Conread position: | 2-276 |
| Cow position: | chr15:363328-363588 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 188, 68 |
| Conread position: | 2-276 |
| Cow position: | chr15:608473-608742 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 37 |
| Conread position: | 2-276 |
| Cow position: | chr15:5234694-5234425 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 18 |
| Conread position: | 2-276 |
| Cow position: | chr15:5498719-5498451 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 126 |
| Conread position: | 2-276 |
| Cow position: | chr15:7191951-7191676 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 170, 17 |
| Conread position: | 2-276 |
| Cow position: | chr15:16583401-16583125 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 17 |
| Conread position: | 2-276 |
| Cow position: | chr15:17233504-17233764 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 241, 25 |
| Conread position: | 2-276 |
| Cow position: | chr15:25666913-25666634 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 213 |
| Conread position: | 2-276 |
| Cow position: | chr15:37381941-37382204 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 2-276 |
| Cow position: | chr15:41583220-41583496 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 3-250 |
| Cow position: | chr15:38162319-38162560 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 3-271 |
| Cow position: | chr15:45111868-45112141 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 169, 16 |
| Conread position: | 3-276 |
| Cow position: | chr15:102956-102685 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 85, 197 |
| Conread position: | 3-276 |
| Cow position: | chr15:143920-143652 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 57 |
| Conread position: | 3-276 |
| Cow position: | chr15:20458989-20458721 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 149 |
| Conread position: | 3-276 |
| Cow position: | chr15:21695862-21695592 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 167, 37 |
| Conread position: | 3-276 |
| Cow position: | chr15:38846407-38846668 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 155, 49 |
| Conread position: | 3-276 |
| Cow position: | chr15:41087551-41087283 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 4-228 |
| Cow position: | chr15:44636134-44635909 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 173 |
| Conread position: | 4-276 |
| Cow position: | chr15:30047224-30046956 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 172 |
| Conread position: | 5-270 |
| Cow position: | chr15:27423083-27422825 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 132 |
| Conread position: | 6-276 |
| Cow position: | chr15:25907551-25907807 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 64 |
| Conread position: | 7-269 |
| Cow position: | chr15:4728801-4728544 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 12 |
| Conread position: | 7-269 |
| Cow position: | chr15:14627632-14627370 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 203 |
| Conread position: | 7-271 |
| Cow position: | chr15:3154570-3154310 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 183, 151 |
| Conread position: | 7-271 |
| Cow position: | chr15:44074100-44073838 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 226 |
| Conread position: | 9-270 |
| Cow position: | chr15:2081726-2081454 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 9-271 |
| Cow position: | chr15:2662841-2663101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 199 |
| Conread position: | 9-271 |
| Cow position: | chr15:4641105-4640846 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr15:6464711-6464454 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 9-271 |
| Cow position: | chr15:21646127-21645868 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr15:25068845-25069102 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 108 |
| Conread position: | 9-271 |
| Cow position: | chr15:33376491-33376231 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 194 |
| Conread position: | 9-276 |
| Cow position: | chr15:52693959-52693699 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 9-277 |
| Cow position: | chr15:488623-488889 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-283 |
| Cow position: | chr15:348970-348699 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 10-269 |
| Cow position: | chr15:26911762-26911507 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 10-270 |
| Cow position: | chr15:47577936-47578203 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 12-271 |
| Cow position: | chr15:28924449-28924197 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 197 |
| Conread position: | 13-276 |
| Cow position: | chr15:15041113-15040856 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 159, 102 |
| Conread position: | 14-270 |
| Cow position: | chr15:4954059-4953809 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 32 |
| Conread position: | 20-276 |
| Cow position: | chr15:10243761-10243509 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 79 |
| Conread position: | 21-276 |
| Cow position: | chr15:51632716-51632466 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 169, 137 |
| Conread position: | 22-271 |
| Cow position: | chr15:7446862-7447112 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 145, 187 |
| Conread position: | 23-276 |
| Cow position: | chr15:39418218-39418473 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 25-271 |
| Cow position: | chr15:50344101-50344343 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 183 |
| Conread position: | 26-271 |
| Cow position: | chr15:4214795-4214553 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 164, 181 |
| Conread position: | 28-270 |
| Cow position: | chr15:20414204-20413968 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 30-263 |
| Cow position: | chr15:12723559-12723794 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 30-268 |
| Cow position: | chr15:52683479-52683709 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 30-270 |
| Cow position: | chr15:4817457-4817215 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 30-271 |
| Cow position: | chr15:4821442-4821679 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 24 |
| Conread position: | 30-271 |
| Cow position: | chr15:28486512-28486750 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 160, 203 |
| Conread position: | 30-271 |
| Cow position: | chr15:39406298-39406536 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 187 |
| Conread position: | 30-276 |
| Cow position: | chr15:5685473-5685715 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 37-268 |
| Cow position: | chr15:15881268-15881492 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 153, 54 |
| Conread position: | 37-276 |
| Cow position: | chr15:22095458-22095688 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 206, 23 |
| Conread position: | 38-263 |
| Cow position: | chr15:17438397-17438166 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 181 |
| Conread position: | 38-271 |
| Cow position: | chr15:24994156-24993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 21 |
| Conread position: | 38-272 |
| Cow position: | chr15:17236048-17236278 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 38-276 |
| Cow position: | chr15:12809539-12809301 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 39-276 |
| Cow position: | chr15:7962434-7962674 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 40-265 |
| Cow position: | chr15:24098191-24097968 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 42-269 |
| Cow position: | chr15:50302552-50302778 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 194 |
| Conread position: | 42-270 |
| Cow position: | chr15:50058975-50058745 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 134, 170 |
| Conread position: | 42-276 |
| Cow position: | chr15:35417219-35416990 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 42-276 |
| Cow position: | chr15:47200949-47201174 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 43-276 |
| Cow position: | chr15:6944425-6944649 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 147, 17 |
| Conread position: | 48-276 |
| Cow position: | chr15:14856094-14855869 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 147, 160 |
| Conread position: | 49-276 |
| Cow position: | chr15:16927695-16927470 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 159 |
| Conread position: | 64-276 |
| Cow position: | chr15:52154369-52154157 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 148 |
| Conread position: | 70-276 |
| Cow position: | chr15:36621937-36622136 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 137 |
| Conread position: | 80-271 |
| Cow position: | chr15:4873767-4873952 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 110, 128 |
| Conread position: | 83-271 |
| Cow position: | chr15:2805696-2805879 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 120 |
| Conread position: | 99-283 |
| Cow position: | chr15:45220572-45220759 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 73, 114 |
Show alignments to all cow chromosomes.