Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-276
Cow position: chr16:11100016-11100286 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 18

Conread position: 1-276
Cow position: chr16:54287656-54287390 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 18

Conread position: 2-204
Cow position: chr16:30143434-30143637 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 45, 17

Conread position: 2-265
Cow position: chr16:35188033-35187768 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 17

Conread position: 2-265
Cow position: chr16:39616522-39616266 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 17

Conread position: 2-269
Cow position: chr16:4399501-4399243 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 59

Conread position: 2-270
Cow position: chr16:8621029-8620771 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 161

Conread position: 2-270
Cow position: chr16:50189815-50190075 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 188, 25

Conread position: 2-271
Cow position: chr16:51113098-51113357 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr16:3633894-3633624 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 60

Conread position: 2-276
Cow position: chr16:4712680-4712409 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 115

Conread position: 2-276
Cow position: chr16:6263066-6263345 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 150

Conread position: 2-276
Cow position: chr16:6692834-6693102 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 11, 35

Conread position: 2-276
Cow position: chr16:14721964-14722232 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr16:15255172-15255441 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 58

Conread position: 2-276
Cow position: chr16:15408094-15408367 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 23

Conread position: 2-276
Cow position: chr16:16402548-16402826 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 50, 208

Conread position: 2-276
Cow position: chr16:18205750-18205469 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 215

Conread position: 2-276
Cow position: chr16:18354173-18354437 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 150, 17

Conread position: 2-276
Cow position: chr16:31122471-31122746 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 209

Conread position: 2-276
Cow position: chr16:31558671-31558403 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 148

Conread position: 2-276
Cow position: chr16:39646338-39646068 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 17

Conread position: 2-276
Cow position: chr16:42970152-42970422 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr16:46752500-46752771 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr16:47242731-47242463 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-276
Cow position: chr16:49126405-49126675 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr16:49252962-49253230 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr16:56912942-56913203 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 189, 50

Conread position: 3-229
Cow position: chr16:7498846-7498620 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 16

Conread position: 3-264
Cow position: chr16:27706437-27706697 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 207

Conread position: 3-264
Cow position: chr16:33177427-33177171 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 135

Conread position: 3-270
Cow position: chr16:22157822-22158093 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 145

Conread position: 3-270
Cow position: chr16:41896122-41895873 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 187, 57

Conread position: 3-271
Cow position: chr16:13989764-13989499 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 199

Conread position: 3-271
Cow position: chr16:29967261-29966993 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 174, 16

Conread position: 3-271
Cow position: chr16:39394354-39394100 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 173, 16

Conread position: 3-276
Cow position: chr16:29158909-29158640 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 16

Conread position: 3-276
Cow position: chr16:50712129-50712399 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 201

Conread position: 3-314
Cow position: chr16:23066447-23066139 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 130

Conread position: 3-320
Cow position: chr16:12635136-12634819 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 157, 17

Conread position: 4-268
Cow position: chr16:16606078-16605818 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 13

Conread position: 4-270
Cow position: chr16:7456689-7456942 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 186, 67

Conread position: 4-270
Cow position: chr16:49217788-49218046 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 172, 64

Conread position: 4-270
Cow position: chr16:49230001-49230263 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 193, 15

Conread position: 4-270
Cow position: chr16:56813191-56813453 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 125, 56

Conread position: 4-271
Cow position: chr16:51598826-51599088 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 15

Conread position: 4-271
Cow position: chr16:53769871-53770133 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 50

Conread position: 5-269
Cow position: chr16:675270-675017 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 185, 49

Conread position: 6-270
Cow position: chr16:49742218-49742486 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 186, 235

Conread position: 7-270
Cow position: chr16:8812799-8813059 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 200

Conread position: 7-270
Cow position: chr16:32522986-32522724 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 66

Conread position: 7-270
Cow position: chr16:33133362-33133103 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 196

Conread position: 9-265
Cow position: chr16:5666400-5666148 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 219, 198

Conread position: 9-270
Cow position: chr16:25454174-25454432 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 199

Conread position: 9-270
Cow position: chr16:37445123-37445379 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 10

Conread position: 9-270
Cow position: chr16:43126402-43126652 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 182, 46

Conread position: 9-270
Cow position: chr16:54322105-54322364 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 9-271
Cow position: chr16:37052761-37053020 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr16:40292862-40293125 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 85, 202

Conread position: 9-271
Cow position: chr16:44228907-44229165 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 198

Conread position: 9-271
Cow position: chr16:47248389-47248133 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 61

Conread position: 9-278
Cow position: chr16:41623583-41623317 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 10-270
Cow position: chr16:29078299-29078559 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 140

Conread position: 11-270
Cow position: chr16:14351158-14351412 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 9

Conread position: 11-271
Cow position: chr16:12086886-12087134 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 49

Conread position: 11-271
Cow position: chr16:31974001-31974251 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 154, 28

Conread position: 12-271
Cow position: chr16:44676659-44676400 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 46

Conread position: 12-276
Cow position: chr16:7542060-7541806 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 179, 157

Conread position: 13-271
Cow position: chr16:11105326-11105068 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 40, 186

Conread position: 13-276
Cow position: chr16:48370179-48370441 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 10

Conread position: 14-291
Cow position: chr16:18758067-18758344 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 37, 91

Conread position: 21-276
Cow position: chr16:3596746-3596994 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 169, 21

Conread position: 22-270
Cow position: chr16:23146604-23146845 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 168, 180

Conread position: 24-276
Cow position: chr16:37924406-37924654 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 27, 38

Conread position: 32-270
Cow position: chr16:7567352-7567111 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 115, 18

Conread position: 35-270
Cow position: chr16:15477926-15477695 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 155, 123

Conread position: 35-271
Cow position: chr16:45464643-45464875 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 193, 168

Conread position: 38-276
Cow position: chr16:53086841-53087082 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 78

Conread position: 40-268
Cow position: chr16:19976582-19976358 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 151, 20

Conread position: 40-271
Cow position: chr16:24974194-24974415 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 190, 20

Conread position: 42-271
Cow position: chr16:11619469-11619244 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 123

Conread position: 42-276
Cow position: chr16:3820903-3820672 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 162

Conread position: 42-276
Cow position: chr16:50273723-50273962 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 169

Conread position: 42-276
Cow position: chr16:55042814-55043045 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 148, 162

Conread position: 43-317
Cow position: chr16:46654889-46654621 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 114

Conread position: 47-276
Cow position: chr16:50453367-50453141 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 160

Conread position: 48-276
Cow position: chr16:22868474-22868690 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 195, 13

Conread position: 49-271
Cow position: chr16:11304377-11304610 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 142, 155

Conread position: 49-276
Cow position: chr16:14758445-14758224 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 141, 60

Conread position: 50-276
Cow position: chr16:17173490-17173273 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 192, 100

Conread position: 51-269
Cow position: chr16:49515523-49515738 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 139, 156

Conread position: 51-276
Cow position: chr16:24445991-24445762 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 115, 161

Conread position: 53-276
Cow position: chr16:25174498-25174274 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 118, 18

Conread position: 55-265
Cow position: chr16:22810310-22810526 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 107, 167

Conread position: 58-271
Cow position: chr16:29513020-29512807 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 154

Conread position: 65-276
Cow position: chr16:21721110-21721314 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 125, 15

Conread position: 67-271
Cow position: chr16:8000701-8000495 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 103, 146

Conread position: 67-276
Cow position: chr16:38178013-38177801 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 98, 146

Conread position: 68-271
Cow position: chr16:54226071-54226275 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 103, 141

Conread position: 68-318
Cow position: chr16:8934182-8934421 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 75, 124

Conread position: 81-270
Cow position: chr16:12516595-12516790 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 87

Conread position: 110-271
Cow position: chr16:5640977-5640819 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 80, 97

Show alignments to all cow chromosomes.