Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-276
Cow position: chr17:25541991-25542257 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 189

Conread position: 2-229
Cow position: chr17:11056554-11056785 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 15, 131

Conread position: 2-249
Cow position: chr17:16869457-16869691 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 243, 110

Conread position: 2-264
Cow position: chr17:4107201-4107455 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 17

Conread position: 2-264
Cow position: chr17:4122936-4123191 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-265
Cow position: chr17:42258727-42258466 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 201

Conread position: 2-268
Cow position: chr17:21335878-21336139 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 88

Conread position: 2-269
Cow position: chr17:3387114-3386854 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-271
Cow position: chr17:11912880-11913146 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-271
Cow position: chr17:12289595-12289865 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 209

Conread position: 2-271
Cow position: chr17:26230759-26230493 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 2-271
Cow position: chr17:32651436-32651171 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 204

Conread position: 2-271
Cow position: chr17:35223379-35223103 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 215

Conread position: 2-271
Cow position: chr17:38829903-38829639 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 63

Conread position: 2-276
Cow position: chr17:5695128-5695393 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 17

Conread position: 2-276
Cow position: chr17:6566291-6566028 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr17:12059271-12059543 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 37, 17

Conread position: 2-276
Cow position: chr17:17222162-17221894 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 16

Conread position: 2-276
Cow position: chr17:22135316-22135048 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 0

Conread position: 2-276
Cow position: chr17:23101391-23101665 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 51

Conread position: 2-276
Cow position: chr17:28539857-28539590 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 17, 51

Conread position: 2-317
Cow position: chr17:34208296-34208604 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-321
Cow position: chr17:10528921-10529239 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 208

Conread position: 3-263
Cow position: chr17:32138581-32138837 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 227, 57

Conread position: 3-271
Cow position: chr17:11638704-11638440 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 19

Conread position: 3-271
Cow position: chr17:31232111-31232385 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 205

Conread position: 3-276
Cow position: chr17:24549991-24549718 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 204

Conread position: 3-276
Cow position: chr17:35184854-35184581 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 13, 146

Conread position: 3-281
Cow position: chr17:40892968-40892704 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 13

Conread position: 4-248
Cow position: chr17:11618398-11618158 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 177

Conread position: 4-270
Cow position: chr17:2152006-2151746 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 238, 21

Conread position: 4-270
Cow position: chr17:6155859-6155589 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 210

Conread position: 4-276
Cow position: chr17:2270586-2270312 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 207

Conread position: 4-276
Cow position: chr17:20800634-20800365 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 203

Conread position: 5-271
Cow position: chr17:26828878-26829141 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 197

Conread position: 6-276
Cow position: chr17:7251859-7251599 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 82

Conread position: 9-265
Cow position: chr17:39735998-39735742 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 10

Conread position: 9-271
Cow position: chr17:4176810-4177069 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr17:7396428-7396689 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 200

Conread position: 9-271
Cow position: chr17:7585283-7585024 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr17:33058745-33059003 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 198

Conread position: 9-276
Cow position: chr17:1971017-1970751 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 149

Conread position: 9-276
Cow position: chr17:11767988-11767717 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 183

Conread position: 9-317
Cow position: chr17:185010-184707 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 224

Conread position: 12-276
Cow position: chr17:11386326-11386054 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 14-271
Cow position: chr17:20269420-20269166 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 193

Conread position: 20-204
Cow position: chr17:44482662-44482482 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 23-277
Cow position: chr17:15363758-15364019 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 112

Conread position: 27-271
Cow position: chr17:24824057-24823819 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 33

Conread position: 30-268
Cow position: chr17:4601751-4601984 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 107

Conread position: 30-270
Cow position: chr17:16904420-16904185 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 197, 80

Conread position: 30-276
Cow position: chr17:18569106-18569352 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 151, 30

Conread position: 38-271
Cow position: chr17:29356490-29356728 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 18

Conread position: 38-276
Cow position: chr17:5745477-5745716 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 58, 24

Conread position: 38-276
Cow position: chr17:24293936-24293701 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 133, 0

Conread position: 39-276
Cow position: chr17:25141035-25140801 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 133, 53

Conread position: 42-265
Cow position: chr17:40741391-40741169 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 99, 167

Conread position: 44-271
Cow position: chr17:36817688-36817467 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 100, 8

Conread position: 44-279
Cow position: chr17:29080152-29079921 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 114, 28

Conread position: 45-300
Cow position: chr17:32472053-32472306 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 162

Conread position: 49-271
Cow position: chr17:30712813-30712594 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 158

Conread position: 50-276
Cow position: chr17:38363486-38363715 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 100, 164

Conread position: 63-276
Cow position: chr17:24334446-24334236 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 127, 145

Conread position: 91-270
Cow position: chr17:18828362-18828536 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 19

Conread position: 93-271
Cow position: chr17:8212834-8212659 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 97, 115

Conread position: 113-268
Cow position: chr17:21756245-21756394 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 35

Conread position: 139-271
Cow position: chr17:1061604-1061733 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 51, 68

Show alignments to all cow chromosomes.