Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-265 |
| Cow position: | chr18:55119621-55119357 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-267 |
| Cow position: | chr18:12585394-12585654 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-268 |
| Cow position: | chr18:12118097-12118360 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 205 |
| Conread position: | 2-268 |
| Cow position: | chr18:19193603-19193861 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-269 |
| Cow position: | chr18:7964978-7964714 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-271 |
| Cow position: | chr18:4496437-4496698 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 2-271 |
| Cow position: | chr18:14815588-14815860 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 211 |
| Conread position: | 2-271 |
| Cow position: | chr18:16045253-16045517 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 189, 140 |
| Conread position: | 2-271 |
| Cow position: | chr18:35012559-35012824 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 103 |
| Conread position: | 2-271 |
| Cow position: | chr18:47183537-47183809 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-271 |
| Cow position: | chr18:51406156-51406412 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 2-276 |
| Cow position: | chr18:7966010-7965751 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-276 |
| Cow position: | chr18:11262706-11262439 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 188, 57 |
| Conread position: | 2-276 |
| Cow position: | chr18:16417950-16418208 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr18:23658812-23659083 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr18:43950592-43950316 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 203 |
| Conread position: | 3-268 |
| Cow position: | chr18:21106415-21106667 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 158, 16 |
| Conread position: | 3-271 |
| Cow position: | chr18:7649740-7649474 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 206 |
| Conread position: | 3-271 |
| Cow position: | chr18:10082621-10082356 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 3-272 |
| Cow position: | chr18:10107445-10107172 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 3-276 |
| Cow position: | chr18:28768112-28767850 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 3-276 |
| Cow position: | chr18:40203053-40203318 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 176, 85 |
| Conread position: | 3-291 |
| Cow position: | chr18:11191179-11190875 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 4-271 |
| Cow position: | chr18:10084266-10084006 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 186, 15 |
| Conread position: | 4-271 |
| Cow position: | chr18:11779411-11779149 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 43, 139 |
| Conread position: | 4-276 |
| Cow position: | chr18:38089832-38090109 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 211 |
| Conread position: | 4-276 |
| Cow position: | chr18:42966583-42966314 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 203 |
| Conread position: | 4-276 |
| Cow position: | chr18:48451421-48451150 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 50 |
| Conread position: | 4-276 |
| Cow position: | chr18:51443683-51443953 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 5-271 |
| Cow position: | chr18:45904148-45904416 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 94 |
| Conread position: | 5-272 |
| Cow position: | chr18:39475797-39476084 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 6-276 |
| Cow position: | chr18:7955890-7955625 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 7-229 |
| Cow position: | chr18:7050691-7050470 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 199, 83 |
| Conread position: | 9-268 |
| Cow position: | chr18:49655455-49655205 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 9-270 |
| Cow position: | chr18:27799792-27800052 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 131, 150 |
| Conread position: | 9-270 |
| Cow position: | chr18:32283612-32283357 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 10 |
| Conread position: | 9-270 |
| Cow position: | chr18:32285131-32284876 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 10 |
| Conread position: | 9-270 |
| Cow position: | chr18:32301276-32301021 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 182, 10 |
| Conread position: | 9-271 |
| Cow position: | chr18:11243536-11243267 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 9-271 |
| Cow position: | chr18:27554814-27555073 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 196 |
| Conread position: | 9-271 |
| Cow position: | chr18:33272685-33272433 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 9-291 |
| Cow position: | chr18:54928317-54928595 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 10-271 |
| Cow position: | chr18:29072502-29072245 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 197 |
| Conread position: | 10-328 |
| Cow position: | chr18:6829324-6829639 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 12-268 |
| Cow position: | chr18:54275002-54274744 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 22-269 |
| Cow position: | chr18:90188-89954 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 73 |
| Conread position: | 22-271 |
| Cow position: | chr18:29759453-29759199 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 193 |
| Conread position: | 23-276 |
| Cow position: | chr18:17324436-17324197 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 28-197 |
| Cow position: | chr18:1592276-1592445 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 29-276 |
| Cow position: | chr18:1954804-1955048 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 178 |
| Conread position: | 30-270 |
| Cow position: | chr18:32209739-32209975 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 159, 178 |
| Conread position: | 39-271 |
| Cow position: | chr18:3193443-3193215 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 172 |
| Conread position: | 42-271 |
| Cow position: | chr18:31082634-31082854 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 42-276 |
| Cow position: | chr18:33158582-33158345 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 44-276 |
| Cow position: | chr18:727338-727108 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 146, 163 |
| Conread position: | 62-229 |
| Cow position: | chr18:38343879-38343707 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 62-276 |
| Cow position: | chr18:26355373-26355581 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 63-264 |
| Cow position: | chr18:56482406-56482608 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 63-269 |
| Cow position: | chr18:30794141-30793943 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 128 |
| Conread position: | 63-270 |
| Cow position: | chr18:48548840-48548640 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 109, 16 |
| Conread position: | 69-276 |
| Cow position: | chr18:16390198-16390408 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 99, 144 |
| Conread position: | 76-271 |
| Cow position: | chr18:6610153-6610340 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 79-270 |
| Cow position: | chr18:14127273-14127460 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 108, 55 |
| Conread position: | 122-276 |
| Cow position: | chr18:10516808-10516657 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 85 |
| Conread position: | 125-277 |
| Cow position: | chr18:32245101-32245250 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 82 |
Show alignments to all cow chromosomes.