Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-268
Cow position: chr19:29627605-29627867 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 169, 41

Conread position: 2-204
Cow position: chr19:17795664-17795460 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 50, 111

Conread position: 2-233
Cow position: chr19:44571894-44571669 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 18

Conread position: 2-265
Cow position: chr19:34654810-34655066 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 18

Conread position: 2-266
Cow position: chr19:35018479-35018738 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-271
Cow position: chr19:39697839-39697576 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 10

Conread position: 2-272
Cow position: chr19:38392566-38392300 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 98

Conread position: 2-276
Cow position: chr19:4445852-4446120 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 97

Conread position: 2-276
Cow position: chr19:46822207-46821942 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 88

Conread position: 2-276
Cow position: chr19:52214856-52214586 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 55

Conread position: 3-270
Cow position: chr19:41139637-41139902 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 205

Conread position: 3-276
Cow position: chr19:32177943-32178211 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 4-270
Cow position: chr19:42417633-42417370 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 203

Conread position: 5-276
Cow position: chr19:2821343-2821068 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 14

Conread position: 6-271
Cow position: chr19:34955933-34956194 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 152

Conread position: 6-276
Cow position: chr19:12788140-12787873 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 166, 34

Conread position: 7-319
Cow position: chr19:1168830-1169134 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 110

Conread position: 9-204
Cow position: chr19:17884257-17884065 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 158
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 181, 24

Conread position: 9-270
Cow position: chr19:736682-736421 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 88, 201

Conread position: 9-270
Cow position: chr19:19500600-19500857 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-270
Cow position: chr19:24956673-24956924 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 181, 39

Conread position: 9-271
Cow position: chr19:8039-7781 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 193

Conread position: 9-271
Cow position: chr19:235651-235910 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 197

Conread position: 9-271
Cow position: chr19:7346473-7346215 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 9-271
Cow position: chr19:30514949-30515208 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr19:39924428-39924170 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 76, 36

Conread position: 9-271
Cow position: chr19:43149673-43149415 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 103

Conread position: 9-297
Cow position: chr19:42304528-42304808 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-319
Cow position: chr19:2249391-2249696 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-319
Cow position: chr19:35362466-35362771 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 11-229
Cow position: chr19:23785947-23785729 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 68

Conread position: 12-276
Cow position: chr19:40714918-40714651 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 155, 201

Conread position: 13-269
Cow position: chr19:55011660-55011408 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 177, 97

Conread position: 13-270
Cow position: chr19:158110-158359 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 97, 47

Conread position: 13-276
Cow position: chr19:742420-742676 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 164, 111

Conread position: 15-276
Cow position: chr19:36722087-36721832 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 45

Conread position: 24-276
Cow position: chr19:29471328-29471075 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 146, 186

Conread position: 28-268
Cow position: chr19:6949642-6949408 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 34

Conread position: 28-276
Cow position: chr19:15766846-15766606 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 95

Conread position: 30-276
Cow position: chr19:55783691-55783452 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 160, 30

Conread position: 33-276
Cow position: chr19:20433175-20433414 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 157, 6

Conread position: 36-265
Cow position: chr19:51644802-51645030 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 173

Conread position: 38-271
Cow position: chr19:36059642-36059413 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 51

Conread position: 38-276
Cow position: chr19:42706634-42706877 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 177

Conread position: 38-280
Cow position: chr19:55210743-55210982 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 14

Conread position: 42-268
Cow position: chr19:30551775-30551552 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 78, 135

Conread position: 42-276
Cow position: chr19:39602411-39602657 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 41, 182

Conread position: 43-271
Cow position: chr19:35142602-35142823 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 148, 17

Conread position: 50-270
Cow position: chr19:36844946-36844727 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 117, 184

Conread position: 51-276
Cow position: chr19:35954614-35954394 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 119, 37

Conread position: 52-276
Cow position: chr19:18016168-18016396 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 85, 36

Conread position: 57-271
Cow position: chr19:26976293-26976507 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 155

Conread position: 62-276
Cow position: chr19:28450895-28450685 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 129, 10

Conread position: 63-271
Cow position: chr19:52305212-52305414 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 120, 0

Conread position: 63-276
Cow position: chr19:9704147-9704363 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 108, 146

Conread position: 74-264
Cow position: chr19:20935413-20935221 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 76, 140

Conread position: 84-276
Cow position: chr19:8033216-8033027 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 106, 123

Conread position: 106-265
Cow position: chr19:28349112-28349267 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 84, 101

Conread position: 118-271
Cow position: chr19:33823033-33822883 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 90

Show alignments to all cow chromosomes.