Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-204
Cow position: chr2:40488361-40488158 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-269
Cow position: chr2:20933471-20933207 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 206

Conread position: 1-276
Cow position: chr2:10656056-10656337 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 217

Conread position: 1-276
Cow position: chr2:81927636-81927347 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 30

Conread position: 2-205
Cow position: chr2:53533027-53533229 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 117, 0

Conread position: 2-264
Cow position: chr2:34617747-34617487 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 18, 160

Conread position: 2-268
Cow position: chr2:19502569-19502837 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 60

Conread position: 2-270
Cow position: chr2:12802875-12803135 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 46

Conread position: 2-270
Cow position: chr2:22254382-22254645 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 62

Conread position: 2-270
Cow position: chr2:31125563-31125299 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 17

Conread position: 2-270
Cow position: chr2:78766262-78765997 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-270
Cow position: chr2:85459020-85458753 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 126

Conread position: 2-271
Cow position: chr2:19212264-19212529 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 17

Conread position: 2-271
Cow position: chr2:31119795-31119531 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 47

Conread position: 2-271
Cow position: chr2:52409490-52409759 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 208

Conread position: 2-271
Cow position: chr2:55632555-55632290 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr2:549535-549806 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 2-276
Cow position: chr2:9591709-9591450 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 189, 32

Conread position: 2-276
Cow position: chr2:16752361-16752627 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 16

Conread position: 2-276
Cow position: chr2:28611310-28611585 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 2-276
Cow position: chr2:32417077-32417360 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 37, 217

Conread position: 2-276
Cow position: chr2:37120963-37120702 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 30, 18

Conread position: 2-276
Cow position: chr2:39815507-39815769 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr2:50328272-50328002 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr2:64533122-64532855 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 47

Conread position: 2-276
Cow position: chr2:70775786-70776062 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 237

Conread position: 2-289
Cow position: chr2:43596391-43596671 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-291
Cow position: chr2:59397279-59397563 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 3-254
Cow position: chr2:55387327-55387081 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 16

Conread position: 3-262
Cow position: chr2:34571689-34571946 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 175

Conread position: 3-271
Cow position: chr2:27618219-27617950 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 169, 98

Conread position: 3-276
Cow position: chr2:10691643-10691921 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 163

Conread position: 3-276
Cow position: chr2:43978122-43978394 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 205

Conread position: 3-276
Cow position: chr2:45563232-45562963 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 16

Conread position: 3-276
Cow position: chr2:62225961-62225686 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 77

Conread position: 4-257
Cow position: chr2:50632292-50632043 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 161
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 137, 67

Conread position: 6-276
Cow position: chr2:77281717-77281446 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 205

Conread position: 7-272
Cow position: chr2:34591764-34592029 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 16

Conread position: 8-276
Cow position: chr2:71437610-71437869 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 52

Conread position: 9-199
Cow position: chr2:43122171-43121981 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-271
Cow position: chr2:841845-841587 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr2:4916520-4916779 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr2:10608260-10608518 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 197, 0

Conread position: 9-271
Cow position: chr2:20521568-20521822 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 181, 95

Conread position: 9-271
Cow position: chr2:48722270-48722012 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 194

Conread position: 9-271
Cow position: chr2:49741305-49741047 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-271
Cow position: chr2:57055370-57055112 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 194

Conread position: 9-271
Cow position: chr2:63706611-63706869 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-276
Cow position: chr2:2604195-2603930 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-276
Cow position: chr2:42226493-42226761 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 58

Conread position: 9-276
Cow position: chr2:64522284-64522561 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 0

Conread position: 9-276
Cow position: chr2:82055361-82055626 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 171, 25

Conread position: 9-319
Cow position: chr2:19810130-19809828 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 181, 37

Conread position: 10-328
Cow position: chr2:11696902-11696591 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 162, 26

Conread position: 11-276
Cow position: chr2:31673046-31672788 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 49

Conread position: 13-271
Cow position: chr2:70704023-70703775 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 224, 55

Conread position: 13-276
Cow position: chr2:76314086-76314341 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 76

Conread position: 23-268
Cow position: chr2:69419806-69420056 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 29, 193

Conread position: 27-276
Cow position: chr2:49608346-49608104 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 163, 149

Conread position: 30-270
Cow position: chr2:56306322-56306557 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 149

Conread position: 30-316
Cow position: chr2:41008925-41009199 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 127

Conread position: 31-270
Cow position: chr2:355802-356044 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 186

Conread position: 38-242
Cow position: chr2:59906574-59906771 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 15, 0

Conread position: 38-276
Cow position: chr2:14710376-14710606 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 171

Conread position: 38-276
Cow position: chr2:29802390-29802626 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 23

Conread position: 38-276
Cow position: chr2:67596257-67596489 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 152, 7

Conread position: 42-271
Cow position: chr2:11899893-11899666 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 148, 157

Conread position: 42-275
Cow position: chr2:48361230-48361001 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 10

Conread position: 42-276
Cow position: chr2:1202885-1202654 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 79

Conread position: 42-276
Cow position: chr2:45312174-45312410 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 104, 171

Conread position: 44-270
Cow position: chr2:35483993-35483762 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 69, 112

Conread position: 46-271
Cow position: chr2:9687828-9688047 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 144, 76

Conread position: 48-276
Cow position: chr2:56737624-56737853 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 142, 67

Conread position: 49-271
Cow position: chr2:30816642-30816426 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 142, 115

Conread position: 52-276
Cow position: chr2:14349502-14349278 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 120, 19

Conread position: 53-276
Cow position: chr2:68190889-68191098 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 97, 46

Conread position: 54-276
Cow position: chr2:39500706-39500488 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 103

Conread position: 54-276
Cow position: chr2:54469067-54469291 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 158

Conread position: 55-272
Cow position: chr2:19749136-19748924 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 175, 77

Conread position: 56-271
Cow position: chr2:82267603-82267811 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 152

Conread position: 63-263
Cow position: chr2:15693911-15693719 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 127, 15

Conread position: 63-270
Cow position: chr2:19287843-19288047 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 144

Conread position: 63-276
Cow position: chr2:13006767-13006560 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 127, 29

Conread position: 63-276
Cow position: chr2:64830397-64830188 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 127, 97

Conread position: 65-271
Cow position: chr2:15568593-15568796 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 125, 142

Conread position: 68-276
Cow position: chr2:425480-425273 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 123, 132

Conread position: 74-270
Cow position: chr2:34048457-34048649 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 88

Conread position: 84-271
Cow position: chr2:6950929-6950748 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 106, 11

Conread position: 89-266
Cow position: chr2:50020200-50020029 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 11

Conread position: 96-276
Cow position: chr2:971327-971151 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 61

Conread position: 101-271
Cow position: chr2:208661-208827 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 106

Conread position: 102-271
Cow position: chr2:36084436-36084270 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 40

Conread position: 129-270
Cow position: chr2:47877543-47877404 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 79

Show alignments to all cow chromosomes.