Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 1-271 |
| Cow position: | chr20:18185402-18185130 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 164, 218 |
| Conread position: | 1-278 |
| Cow position: | chr20:9267299-9267578 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 33 |
| Conread position: | 2-269 |
| Cow position: | chr20:7756807-7757068 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 46 |
| Conread position: | 2-271 |
| Cow position: | chr20:4756003-4756266 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 2-271 |
| Cow position: | chr20:6096663-6096927 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 140 |
| Conread position: | 2-271 |
| Cow position: | chr20:7806740-7807006 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 202 |
| Conread position: | 2-271 |
| Cow position: | chr20:14718919-14719184 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 2-272 |
| Cow position: | chr20:14756246-14756514 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 2-276 |
| Cow position: | chr20:398472-398738 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 228, 46 |
| Conread position: | 2-276 |
| Cow position: | chr20:5104613-5104883 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 7 |
| Conread position: | 2-276 |
| Cow position: | chr20:6423786-6423525 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 2-276 |
| Cow position: | chr20:12839877-12839608 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 2-276 |
| Cow position: | chr20:20353092-20353363 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr20:20546454-20546179 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 2-276 |
| Cow position: | chr20:28441085-28440823 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 137, 25 |
| Conread position: | 2-276 |
| Cow position: | chr20:31261554-31261290 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 3-264 |
| Cow position: | chr20:17831667-17831405 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 154, 179 |
| Conread position: | 3-271 |
| Cow position: | chr20:9473793-9474057 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 75 |
| Conread position: | 3-276 |
| Cow position: | chr20:20732310-20732034 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 202 |
| Conread position: | 4-204 |
| Cow position: | chr20:32548787-32548588 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 186, 18 |
| Conread position: | 4-276 |
| Cow position: | chr20:5078015-5077747 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 4-276 |
| Cow position: | chr20:24398812-24399074 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 186, 121 |
| Conread position: | 4-276 |
| Cow position: | chr20:30817357-30817087 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 209 |
| Conread position: | 5-265 |
| Cow position: | chr20:4895074-4895338 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 211 |
| Conread position: | 5-271 |
| Cow position: | chr20:6258244-6258506 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 131 |
| Conread position: | 6-271 |
| Cow position: | chr20:17733955-17734219 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 142, 60 |
| Conread position: | 6-276 |
| Cow position: | chr20:13269443-13269178 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 93 |
| Conread position: | 7-270 |
| Cow position: | chr20:5539203-5538942 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 53 |
| Conread position: | 7-270 |
| Cow position: | chr20:12567272-12567529 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 12 |
| Conread position: | 7-270 |
| Cow position: | chr20:15089320-15089575 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 199, 53 |
| Conread position: | 7-270 |
| Cow position: | chr20:27877541-27877281 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 201 |
| Conread position: | 9-201 |
| Cow position: | chr20:3378366-3378174 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-263 |
| Cow position: | chr20:15937522-15937273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 163, 76 |
| Conread position: | 9-271 |
| Cow position: | chr20:14806701-14806443 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 9-271 |
| Cow position: | chr20:20437979-20438237 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 199 |
| Conread position: | 9-276 |
| Cow position: | chr20:6477537-6477288 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 181, 51 |
| Conread position: | 9-278 |
| Cow position: | chr20:5644648-5644373 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 12-271 |
| Cow position: | chr20:18091561-18091817 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 195 |
| Conread position: | 23-276 |
| Cow position: | chr20:5939173-5939425 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 30-270 |
| Cow position: | chr20:26683595-26683830 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 38-271 |
| Cow position: | chr20:34776920-34776684 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 38-276 |
| Cow position: | chr20:4788452-4788683 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 40-276 |
| Cow position: | chr20:34107749-34107510 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 132, 173 |
| Conread position: | 42-271 |
| Cow position: | chr20:11389601-11389823 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 130, 46 |
| Conread position: | 42-271 |
| Cow position: | chr20:14759926-14760158 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 125, 171 |
| Conread position: | 44-277 |
| Cow position: | chr20:12206330-12206555 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 146, 48 |
| Conread position: | 49-276 |
| Cow position: | chr20:40512012-40512241 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 122, 164 |
| Conread position: | 51-271 |
| Cow position: | chr20:7182937-7183161 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 53-271 |
| Cow position: | chr20:22850890-22850672 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 56-268 |
| Cow position: | chr20:20983793-20983589 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 58-276 |
| Cow position: | chr20:24391767-24391552 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 63-276 |
| Cow position: | chr20:20898967-20898760 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 65-268 |
| Cow position: | chr20:4911848-4911649 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 125, 107 |
| Conread position: | 89-271 |
| Cow position: | chr20:4205611-4205438 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 102, 82 |
| Conread position: | 111-270 |
| Cow position: | chr20:4668656-4668499 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 95 |
| Conread position: | 125-270 |
| Cow position: | chr20:7994603-7994742 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 39 |
Show alignments to all cow chromosomes.