Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-271
Cow position: chr21:37924358-37924083 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 19, 163

Conread position: 1-276
Cow position: chr21:9862781-9863052 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 168, 34

Conread position: 2-201
Cow position: chr21:23822011-23821813 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 0

Conread position: 2-265
Cow position: chr21:27229952-27230208 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 46

Conread position: 2-268
Cow position: chr21:725049-725308 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 46

Conread position: 2-268
Cow position: chr21:7716948-7717207 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 58

Conread position: 2-270
Cow position: chr21:6764859-6765122 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 2-270
Cow position: chr21:13300995-13300725 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 2-271
Cow position: chr21:22856057-22855799 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 10

Conread position: 2-271
Cow position: chr21:23192675-23192942 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 204

Conread position: 2-271
Cow position: chr21:33729277-33729012 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 159

Conread position: 2-271
Cow position: chr21:34254439-34254702 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 70

Conread position: 2-271
Cow position: chr21:48637903-48638166 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 195

Conread position: 2-273
Cow position: chr21:27341754-27342010 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 148, 58

Conread position: 2-275
Cow position: chr21:17416919-17417181 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 82, 116

Conread position: 2-276
Cow position: chr21:393864-393594 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 174

Conread position: 2-276
Cow position: chr21:1464071-1463804 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 186, 23

Conread position: 2-276
Cow position: chr21:2657431-2657167 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-276
Cow position: chr21:5649749-5649479 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr21:6623985-6623721 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 46, 17

Conread position: 2-276
Cow position: chr21:13089636-13089900 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 8, 61

Conread position: 2-276
Cow position: chr21:18979003-18979283 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 47, 15

Conread position: 2-276
Cow position: chr21:23293313-23293582 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 62

Conread position: 2-276
Cow position: chr21:33419872-33420144 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 178

Conread position: 2-276
Cow position: chr21:34658877-34658610 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 188, 118

Conread position: 3-254
Cow position: chr21:21170100-21170352 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 187, 174

Conread position: 3-268
Cow position: chr21:15742249-15742523 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 216

Conread position: 3-268
Cow position: chr21:23683392-23683122 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 212

Conread position: 3-269
Cow position: chr21:2847188-2847458 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 212

Conread position: 3-270
Cow position: chr21:2420346-2420083 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 26

Conread position: 3-276
Cow position: chr21:38900615-38900356 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 96

Conread position: 4-229
Cow position: chr21:46463030-46462805 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 186, 76

Conread position: 4-271
Cow position: chr21:2904619-2904886 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 206

Conread position: 4-271
Cow position: chr21:36712038-36711770 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 15

Conread position: 4-276
Cow position: chr21:14727888-14727628 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 15

Conread position: 5-265
Cow position: chr21:19958066-19957814 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 231, 49

Conread position: 5-270
Cow position: chr21:22857017-22856758 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 80

Conread position: 5-271
Cow position: chr21:17482599-17482336 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 186, 202

Conread position: 6-314
Cow position: chr21:20549070-20549387 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 145

Conread position: 9-270
Cow position: chr21:3920375-3920634 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 192

Conread position: 9-270
Cow position: chr21:19350696-19350953 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-271
Cow position: chr21:2515009-2514751 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 182, 10

Conread position: 9-271
Cow position: chr21:7038027-7038286 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr21:19614409-19614151 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 194

Conread position: 9-271
Cow position: chr21:34910027-34909769 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 166

Conread position: 9-271
Cow position: chr21:36657409-36657146 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 151, 41

Conread position: 11-270
Cow position: chr21:12153967-12153713 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 201

Conread position: 11-271
Cow position: chr21:11676419-11676688 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 45, 191

Conread position: 11-276
Cow position: chr21:10263877-10263613 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 83

Conread position: 12-271
Cow position: chr21:15584570-15584823 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 140, 55

Conread position: 12-276
Cow position: chr21:8125961-8126213 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 15, 56

Conread position: 14-270
Cow position: chr21:17208320-17208074 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 175, 48

Conread position: 17-276
Cow position: chr21:471463-471195 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 202

Conread position: 24-271
Cow position: chr21:22464611-22464366 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 184

Conread position: 25-286
Cow position: chr21:3496357-3496611 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 183

Conread position: 29-276
Cow position: chr21:9218742-9218506 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 51, 13

Conread position: 30-270
Cow position: chr21:44074260-44074039 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 156, 79

Conread position: 30-276
Cow position: chr21:446872-446629 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 135, 30

Conread position: 38-265
Cow position: chr21:21000243-21000472 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 131, 169

Conread position: 38-271
Cow position: chr21:1752527-1752297 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 152, 166

Conread position: 38-276
Cow position: chr21:2927426-2927660 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 56, 170

Conread position: 38-276
Cow position: chr21:25473308-25473074 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 152, 47

Conread position: 40-271
Cow position: chr21:24418172-24418405 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 173

Conread position: 42-270
Cow position: chr21:32113-31889 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 148, 134

Conread position: 42-276
Cow position: chr21:3765637-3765865 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 148, 116

Conread position: 42-276
Cow position: chr21:4276807-4277030 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 10

Conread position: 43-271
Cow position: chr21:12801978-12802206 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 25, 136

Conread position: 49-270
Cow position: chr21:29855470-29855252 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 87, 94

Conread position: 49-276
Cow position: chr21:2260876-2261109 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 167

Conread position: 50-276
Cow position: chr21:6051275-6051049 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 125, 10

Conread position: 51-269
Cow position: chr21:6619250-6619467 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 116, 17

Conread position: 51-319
Cow position: chr21:25291801-25291533 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 121, 72

Conread position: 68-283
Cow position: chr21:18846051-18846258 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 123, 23

Conread position: 74-276
Cow position: chr21:2293091-2293291 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 116, 64

Conread position: 89-276
Cow position: chr21:21907823-21908007 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 118

Conread position: 117-276
Cow position: chr21:29955520-29955676 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 90

Show alignments to all cow chromosomes.