Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-204 |
| Cow position: | chr22:1609980-1610182 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-232 |
| Cow position: | chr22:14924948-14925175 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 2-253 |
| Cow position: | chr22:28071330-28071085 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 69 |
| Conread position: | 2-264 |
| Cow position: | chr22:1874494-1874240 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 53 |
| Conread position: | 2-266 |
| Cow position: | chr22:8882801-8882536 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 2-268 |
| Cow position: | chr22:25246685-25246423 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 20 |
| Conread position: | 2-269 |
| Cow position: | chr22:877298-877036 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-270 |
| Cow position: | chr22:11600570-11600316 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 2-271 |
| Cow position: | chr22:13017006-13017271 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 17 |
| Conread position: | 2-271 |
| Cow position: | chr22:15919859-15920125 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-271 |
| Cow position: | chr22:29955223-29955491 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 175, 60 |
| Conread position: | 2-271 |
| Cow position: | chr22:38439382-38439642 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 94 |
| Conread position: | 2-271 |
| Cow position: | chr22:38959604-38959870 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 110 |
| Conread position: | 2-276 |
| Cow position: | chr22:1986785-1986517 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 2-276 |
| Cow position: | chr22:12637457-12637188 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr22:14816649-14816911 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 189, 28 |
| Conread position: | 2-276 |
| Cow position: | chr22:15760132-15759868 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 133 |
| Conread position: | 2-276 |
| Cow position: | chr22:16044653-16044928 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 236 |
| Conread position: | 2-276 |
| Cow position: | chr22:39472600-39472868 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr22:43292125-43292408 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 217 |
| Conread position: | 2-293 |
| Cow position: | chr22:27818779-27818488 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 45, 208 |
| Conread position: | 3-265 |
| Cow position: | chr22:11969336-11969598 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 3-270 |
| Cow position: | chr22:12086604-12086867 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 3-270 |
| Cow position: | chr22:13695639-13695904 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 202 |
| Conread position: | 3-272 |
| Cow position: | chr22:15859779-15859523 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 187, 57 |
| Conread position: | 3-276 |
| Cow position: | chr22:33901301-33901570 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 17 |
| Conread position: | 4-270 |
| Cow position: | chr22:18233858-18233602 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 23 |
| Conread position: | 4-270 |
| Cow position: | chr22:25658761-25659023 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 203 |
| Conread position: | 4-271 |
| Cow position: | chr22:4076125-4076379 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 15 |
| Conread position: | 4-271 |
| Cow position: | chr22:26106832-26106567 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 204 |
| Conread position: | 4-271 |
| Cow position: | chr22:34894746-34894484 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 47 |
| Conread position: | 4-276 |
| Cow position: | chr22:30689405-30689135 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 179 |
| Conread position: | 4-277 |
| Cow position: | chr22:13688338-13688607 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 186, 99 |
| Conread position: | 4-291 |
| Cow position: | chr22:32651281-32651005 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 186, 48 |
| Conread position: | 9-264 |
| Cow position: | chr22:3987281-3987029 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 149, 195 |
| Conread position: | 9-270 |
| Cow position: | chr22:15869652-15869401 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 51 |
| Conread position: | 9-270 |
| Cow position: | chr22:43743547-43743793 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 181, 11 |
| Conread position: | 9-271 |
| Cow position: | chr22:16203784-16203527 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 9-271 |
| Cow position: | chr22:26088274-26088517 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 181, 51 |
| Conread position: | 9-271 |
| Cow position: | chr22:32152987-32153248 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 9-271 |
| Cow position: | chr22:36609704-36609960 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 181, 106 |
| Conread position: | 9-276 |
| Cow position: | chr22:30954808-30954545 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-317 |
| Cow position: | chr22:39708218-39707919 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 23 |
| Conread position: | 10-276 |
| Cow position: | chr22:38107464-38107211 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 50 |
| Conread position: | 12-271 |
| Cow position: | chr22:11613194-11612938 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 195 |
| Conread position: | 12-276 |
| Cow position: | chr22:33415247-33415494 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 178, 48 |
| Conread position: | 13-276 |
| Cow position: | chr22:2070736-2070473 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 158, 60 |
| Conread position: | 13-276 |
| Cow position: | chr22:4292538-4292288 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 40 |
| Conread position: | 13-283 |
| Cow position: | chr22:34902773-34902503 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 197 |
| Conread position: | 20-276 |
| Cow position: | chr22:36539908-36540170 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 193 |
| Conread position: | 23-318 |
| Cow position: | chr22:42605391-42605098 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 25-232 |
| Cow position: | chr22:1289758-1289956 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 25-271 |
| Cow position: | chr22:10323463-10323220 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 179 |
| Conread position: | 29-271 |
| Cow position: | chr22:41980542-41980778 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 196, 20 |
| Conread position: | 30-233 |
| Cow position: | chr22:10314839-10314644 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 30-270 |
| Cow position: | chr22:37137635-37137399 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 38-271 |
| Cow position: | chr22:24630862-24630623 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 38-271 |
| Cow position: | chr22:30963842-30963621 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-276 |
| Cow position: | chr22:19775711-19775949 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 39-270 |
| Cow position: | chr22:4061334-4061560 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 40-268 |
| Cow position: | chr22:34636621-34636851 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 42-264 |
| Cow position: | chr22:28351945-28352162 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 148, 47 |
| Conread position: | 42-280 |
| Cow position: | chr22:1591990-1591755 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 148, 166 |
| Conread position: | 43-276 |
| Cow position: | chr22:2523260-2523031 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 200, 163 |
| Conread position: | 43-287 |
| Cow position: | chr22:26070362-26070114 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 114, 9 |
| Conread position: | 46-270 |
| Cow position: | chr22:19828246-19828465 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 65 |
| Conread position: | 46-271 |
| Cow position: | chr22:32952196-32951971 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 126, 14 |
| Conread position: | 51-276 |
| Cow position: | chr22:2623818-2624044 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 190 |
| Conread position: | 53-269 |
| Cow position: | chr22:36546411-36546622 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 53-271 |
| Cow position: | chr22:39696036-39695821 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 138, 154 |
| Conread position: | 60-276 |
| Cow position: | chr22:5928963-5929187 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 61-276 |
| Cow position: | chr22:36587230-36587443 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 146 |
| Conread position: | 63-271 |
| Cow position: | chr22:5016019-5015813 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 64-276 |
| Cow position: | chr22:34900651-34900442 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 126, 143 |
| Conread position: | 75-276 |
| Cow position: | chr22:29036850-29037045 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 76-271 |
| Cow position: | chr22:8713687-8713490 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 137 |
| Conread position: | 86-276 |
| Cow position: | chr22:39602179-39601993 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 90-264 |
| Cow position: | chr22:40386828-40386658 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 95-276 |
| Cow position: | chr22:22861866-22862044 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 89, 112 |
| Conread position: | 99-276 |
| Cow position: | chr22:59087-58913 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 144, 104 |
| Conread position: | 99-276 |
| Cow position: | chr22:34750269-34750096 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 35 |
Show alignments to all cow chromosomes.