Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-264 |
| Cow position: | chr24:18025217-18025468 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 18 |
| Conread position: | 2-270 |
| Cow position: | chr24:12198269-12198537 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 2-271 |
| Cow position: | chr24:18970737-18971014 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 2-271 |
| Cow position: | chr24:23616449-23616184 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 17 |
| Conread position: | 2-271 |
| Cow position: | chr24:27763556-27763292 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 2-271 |
| Cow position: | chr24:30484189-30484445 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-271 |
| Cow position: | chr24:33238793-33239063 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 207 |
| Conread position: | 2-271 |
| Cow position: | chr24:39238553-39238287 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 2-272 |
| Cow position: | chr24:22193480-22193214 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 130 |
| Conread position: | 2-276 |
| Cow position: | chr24:7001313-7001584 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 2-276 |
| Cow position: | chr24:18266417-18266678 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 89 |
| Conread position: | 2-276 |
| Cow position: | chr24:24137096-24137367 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-276 |
| Cow position: | chr24:32205039-32205319 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 214 |
| Conread position: | 2-276 |
| Cow position: | chr24:33944162-33943886 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 3-270 |
| Cow position: | chr24:9070681-9070942 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 204 |
| Conread position: | 3-271 |
| Cow position: | chr24:32693456-32693194 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 59 |
| Conread position: | 3-276 |
| Cow position: | chr24:25677788-25677511 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 91 |
| Conread position: | 4-270 |
| Cow position: | chr24:27754449-27754182 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 4-270 |
| Cow position: | chr24:32609391-32609129 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 208 |
| Conread position: | 4-271 |
| Cow position: | chr24:31309174-31308916 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 56 |
| Conread position: | 4-282 |
| Cow position: | chr24:16645853-16646123 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 158, 88 |
| Conread position: | 4-283 |
| Cow position: | chr24:27844767-27845043 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 203 |
| Conread position: | 5-276 |
| Cow position: | chr24:27290628-27290361 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 5-276 |
| Cow position: | chr24:33230417-33230152 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 35 |
| Conread position: | 7-262 |
| Cow position: | chr24:32854288-32854037 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 199, 225 |
| Conread position: | 8-270 |
| Cow position: | chr24:19815331-19815593 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 200 |
| Conread position: | 8-271 |
| Cow position: | chr24:6067270-6067527 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 52 |
| Conread position: | 9-204 |
| Cow position: | chr24:18485252-18485447 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 181, 167 |
| Conread position: | 9-204 |
| Cow position: | chr24:39729670-39729867 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 9-270 |
| Cow position: | chr24:12091050-12090793 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr24:2118949-2118690 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr24:17720342-17720605 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 209 |
| Conread position: | 9-271 |
| Cow position: | chr24:27720005-27720258 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 9-276 |
| Cow position: | chr24:12377038-12377301 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-276 |
| Cow position: | chr24:27906176-27905913 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-276 |
| Cow position: | chr24:33291429-33291688 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 9-317 |
| Cow position: | chr24:30768458-30768163 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 181, 53 |
| Conread position: | 11-271 |
| Cow position: | chr24:31770570-31770298 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 31, 211 |
| Conread position: | 12-276 |
| Cow position: | chr24:39493041-39492787 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 178, 53 |
| Conread position: | 21-278 |
| Cow position: | chr24:27052756-27053006 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 46 |
| Conread position: | 22-270 |
| Cow position: | chr24:9087738-9087976 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 169, 12 |
| Conread position: | 23-276 |
| Cow position: | chr24:18839582-18839828 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 25-268 |
| Cow position: | chr24:27748136-27747906 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 165, 35 |
| Conread position: | 26-270 |
| Cow position: | chr24:34761568-34761328 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 35-271 |
| Cow position: | chr24:25524791-25524564 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 38-270 |
| Cow position: | chr24:44877549-44877321 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 146, 114 |
| Conread position: | 40-271 |
| Cow position: | chr24:6450245-6450027 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 40-271 |
| Cow position: | chr24:12263973-12264208 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 174 |
| Conread position: | 42-276 |
| Cow position: | chr24:25229359-25229599 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 174 |
| Conread position: | 43-258 |
| Cow position: | chr24:33052585-33052796 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 190, 158 |
| Conread position: | 47-268 |
| Cow position: | chr24:11734446-11734221 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 49-264 |
| Cow position: | chr24:16556945-16557157 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 50-276 |
| Cow position: | chr24:25424712-25424493 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 52-271 |
| Cow position: | chr24:41063497-41063276 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 120, 105 |
| Conread position: | 52-318 |
| Cow position: | chr24:41055222-41054963 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 138, 36 |
| Conread position: | 57-276 |
| Cow position: | chr24:38002024-38002250 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 112-270 |
| Cow position: | chr24:20225223-20225378 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 79, 95 |
Show alignments to all cow chromosomes.