Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-268 |
| Cow position: | chr27:1768458-1768194 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 58 |
| Conread position: | 2-270 |
| Cow position: | chr27:23502641-23502904 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 58 |
| Conread position: | 2-271 |
| Cow position: | chr27:1173366-1173101 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 202 |
| Conread position: | 2-276 |
| Cow position: | chr27:8291834-8291566 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 133 |
| Conread position: | 2-276 |
| Cow position: | chr27:11255690-11255963 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 231 |
| Conread position: | 2-276 |
| Cow position: | chr27:15272083-15272354 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-276 |
| Cow position: | chr27:16292573-16292842 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 2-276 |
| Cow position: | chr27:17472990-17473269 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 2-276 |
| Cow position: | chr27:17646021-17645747 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 213 |
| Conread position: | 2-317 |
| Cow position: | chr27:23511299-23511606 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 58 |
| Conread position: | 2-317 |
| Cow position: | chr27:26087406-26087709 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 3-259 |
| Cow position: | chr27:13273828-13273580 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 57 |
| Conread position: | 3-262 |
| Cow position: | chr27:1636766-1636517 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 166, 69 |
| Conread position: | 3-268 |
| Cow position: | chr27:9262285-9262548 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 162, 16 |
| Conread position: | 3-271 |
| Cow position: | chr27:29309205-29309463 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 3-276 |
| Cow position: | chr27:13875910-13876173 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 24 |
| Conread position: | 3-276 |
| Cow position: | chr27:15315669-15315936 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 3-276 |
| Cow position: | chr27:16787005-16787281 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 210 |
| Conread position: | 4-270 |
| Cow position: | chr27:9337697-9337955 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 38 |
| Conread position: | 4-270 |
| Cow position: | chr27:13409989-13409725 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 144 |
| Conread position: | 4-270 |
| Cow position: | chr27:15349624-15349363 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 188 |
| Conread position: | 4-271 |
| Cow position: | chr27:2901062-2900799 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 202 |
| Conread position: | 5-276 |
| Cow position: | chr27:13198096-13198352 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 185, 31 |
| Conread position: | 7-264 |
| Cow position: | chr27:2556993-2557259 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 7-270 |
| Cow position: | chr27:2332485-2332229 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 57 |
| Conread position: | 7-277 |
| Cow position: | chr27:26935192-26934926 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 6, 203 |
| Conread position: | 9-270 |
| Cow position: | chr27:3988795-3989051 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 11 |
| Conread position: | 9-270 |
| Cow position: | chr27:28984757-28984495 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 9-276 |
| Cow position: | chr27:26436513-26436256 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 181, 86 |
| Conread position: | 11-276 |
| Cow position: | chr27:20866342-20866075 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 11-293 |
| Cow position: | chr27:27019914-27019638 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 49 |
| Conread position: | 12-276 |
| Cow position: | chr27:20629216-20629476 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 12-281 |
| Cow position: | chr27:8727586-8727311 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 13-276 |
| Cow position: | chr27:19962661-19962928 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 202 |
| Conread position: | 14-271 |
| Cow position: | chr27:26848729-26848976 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 19-271 |
| Cow position: | chr27:27064246-27064002 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 171, 43 |
| Conread position: | 29-271 |
| Cow position: | chr27:4295208-4294964 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 142, 15 |
| Conread position: | 31-229 |
| Cow position: | chr27:24055661-24055464 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 31-256 |
| Cow position: | chr27:16588467-16588249 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 159, 14 |
| Conread position: | 38-268 |
| Cow position: | chr27:27527994-27527767 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 152, 169 |
| Conread position: | 38-269 |
| Cow position: | chr27:12278063-12277836 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 38-269 |
| Cow position: | chr27:21246618-21246851 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 40-276 |
| Cow position: | chr27:23658518-23658284 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 112, 81 |
| Conread position: | 42-271 |
| Cow position: | chr27:13638745-13638524 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 42-276 |
| Cow position: | chr27:10307058-10306825 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 43-276 |
| Cow position: | chr27:21418778-21418547 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 49-263 |
| Cow position: | chr27:6019481-6019272 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 142, 158 |
| Conread position: | 50-269 |
| Cow position: | chr27:15375917-15375704 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 107 |
| Conread position: | 52-270 |
| Cow position: | chr27:28685389-28685608 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 63-276 |
| Cow position: | chr27:11470463-11470253 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 95-276 |
| Cow position: | chr27:28008807-28008618 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 99-276 |
| Cow position: | chr27:17331920-17332093 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 101-276 |
| Cow position: | chr27:16263591-16263763 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 106 |
Show alignments to all cow chromosomes.