Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 1-264 |
| Cow position: | chr28:6577441-6577180 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 169, 66 |
| Conread position: | 1-270 |
| Cow position: | chr28:18790797-18790535 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 63 |
| Conread position: | 2-197 |
| Cow position: | chr28:4022167-4021972 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 2-263 |
| Cow position: | chr28:2814714-2814972 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 187, 90 |
| Conread position: | 2-268 |
| Cow position: | chr28:21844740-21844479 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 17 |
| Conread position: | 2-270 |
| Cow position: | chr28:23839993-23839735 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 2-271 |
| Cow position: | chr28:7372466-7372732 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-271 |
| Cow position: | chr28:11451682-11451955 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 182 |
| Conread position: | 2-271 |
| Cow position: | chr28:11752360-11752628 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 166 |
| Conread position: | 2-271 |
| Cow position: | chr28:14151019-14150758 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 61 |
| Conread position: | 2-271 |
| Cow position: | chr28:15272476-15272740 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 69 |
| Conread position: | 2-271 |
| Cow position: | chr28:24674506-24674240 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 206 |
| Conread position: | 2-272 |
| Cow position: | chr28:17316643-17316383 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 15 |
| Conread position: | 2-276 |
| Cow position: | chr28:1316007-1316276 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 44 |
| Conread position: | 2-276 |
| Cow position: | chr28:3144107-3144372 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 2-276 |
| Cow position: | chr28:7684893-7685161 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 21 |
| Conread position: | 2-276 |
| Cow position: | chr28:7882586-7882318 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 2-276 |
| Cow position: | chr28:8022326-8022596 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 205 |
| Conread position: | 2-276 |
| Cow position: | chr28:13474090-13473827 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 2-276 |
| Cow position: | chr28:15375041-15375307 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 42 |
| Conread position: | 2-276 |
| Cow position: | chr28:24966172-24965900 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 2-276 |
| Cow position: | chr28:25399674-25399398 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 2-277 |
| Cow position: | chr28:25070901-25070615 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 2-329 |
| Cow position: | chr28:22500698-22501015 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 3-270 |
| Cow position: | chr28:21380661-21380405 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 3-271 |
| Cow position: | chr28:10699203-10699451 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 3-271 |
| Cow position: | chr28:34561142-34560880 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 228, 121 |
| Conread position: | 3-276 |
| Cow position: | chr28:11827280-11827007 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 4-269 |
| Cow position: | chr28:8787333-8787082 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 186, 137 |
| Conread position: | 4-270 |
| Cow position: | chr28:5768977-5768723 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 4-270 |
| Cow position: | chr28:28341076-28340819 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 4-271 |
| Cow position: | chr28:18591053-18590782 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 4-271 |
| Cow position: | chr28:19854899-19854626 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 5-276 |
| Cow position: | chr28:11426763-11427021 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 59 |
| Conread position: | 5-283 |
| Cow position: | chr28:16388425-16388157 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 55 |
| Conread position: | 6-276 |
| Cow position: | chr28:17744303-17744572 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 7-270 |
| Cow position: | chr28:19301076-19300815 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 201 |
| Conread position: | 8-270 |
| Cow position: | chr28:24603958-24603700 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 102 |
| Conread position: | 8-276 |
| Cow position: | chr28:19194541-19194276 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 170 |
| Conread position: | 9-271 |
| Cow position: | chr28:5638084-5637825 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr28:6090938-6090679 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 61 |
| Conread position: | 9-271 |
| Cow position: | chr28:6319130-6319389 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr28:7945978-7946237 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr28:30250159-30249900 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-276 |
| Cow position: | chr28:2523166-2522890 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 9-276 |
| Cow position: | chr28:25727159-25726893 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 205 |
| Conread position: | 9-317 |
| Cow position: | chr28:2615791-2616094 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-319 |
| Cow position: | chr28:9182901-9182597 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-327 |
| Cow position: | chr28:882734-883048 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 199 |
| Conread position: | 10-271 |
| Cow position: | chr28:7697225-7697484 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 162, 36 |
| Conread position: | 12-249 |
| Cow position: | chr28:25806364-25806138 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 12-271 |
| Cow position: | chr28:1943267-1943522 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 195 |
| Conread position: | 12-276 |
| Cow position: | chr28:17762431-17762166 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 159, 37 |
| Conread position: | 13-271 |
| Cow position: | chr28:10534155-10534415 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 25-264 |
| Cow position: | chr28:22354342-22354109 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 161, 132 |
| Conread position: | 25-277 |
| Cow position: | chr28:4938462-4938224 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 165, 29 |
| Conread position: | 25-317 |
| Cow position: | chr28:19552364-19552657 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 153, 138 |
| Conread position: | 27-271 |
| Cow position: | chr28:31841922-31842164 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 181 |
| Conread position: | 30-272 |
| Cow position: | chr28:20409136-20408902 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 33-276 |
| Cow position: | chr28:22439645-22439403 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 47-271 |
| Cow position: | chr28:19393614-19393392 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 103, 161 |
| Conread position: | 49-264 |
| Cow position: | chr28:16371055-16371259 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 50-276 |
| Cow position: | chr28:10529731-10529950 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 11 |
| Conread position: | 52-316 |
| Cow position: | chr28:19961624-19961358 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 161 |
| Conread position: | 53-268 |
| Cow position: | chr28:9285630-9285842 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 63-271 |
| Cow position: | chr28:10674429-10674221 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 180, 134 |
| Conread position: | 63-275 |
| Cow position: | chr28:12097006-12097211 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 181, 36 |
| Conread position: | 63-276 |
| Cow position: | chr28:3068875-3068659 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 151 |
| Conread position: | 81-271 |
| Cow position: | chr28:21672519-21672333 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 99-274 |
| Cow position: | chr28:15410544-15410372 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 91, 108 |
Show alignments to all cow chromosomes.