Cow genome map
| Conread name: | Fet1-UMC-pd20fet-017-h10 |
| Conread position: | 2-271 |
| Cow position: | chr29:10155041-10154779 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 10 |
| Conread position: | 2-271 |
| Cow position: | chr29:14116820-14116557 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 70 |
| Conread position: | 2-271 |
| Cow position: | chr29:32799925-32800190 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 2-271 |
| Cow position: | chr29:35434648-35434382 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 205 |
| Conread position: | 2-273 |
| Cow position: | chr29:11136111-11136375 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr29:686414-686684 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 2-276 |
| Cow position: | chr29:17409107-17408842 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 2-276 |
| Cow position: | chr29:18212205-18212491 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 2-276 |
| Cow position: | chr29:21592482-21592220 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 206 |
| Conread position: | 2-276 |
| Cow position: | chr29:36586356-36586084 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 2-279 |
| Cow position: | chr29:5187011-5187279 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 18 |
| Conread position: | 2-318 |
| Cow position: | chr29:7666253-7666563 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 16 |
| Conread position: | 3-259 |
| Cow position: | chr29:10674791-10674539 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 187, 173 |
| Conread position: | 3-279 |
| Cow position: | chr29:22339436-22339723 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 4-271 |
| Cow position: | chr29:25423601-25423349 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 4-271 |
| Cow position: | chr29:43009334-43009600 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 204 |
| Conread position: | 4-276 |
| Cow position: | chr29:2744496-2744763 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 197 |
| Conread position: | 4-276 |
| Cow position: | chr29:15944345-15944079 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 160 |
| Conread position: | 5-270 |
| Cow position: | chr29:32808372-32808113 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 139 |
| Conread position: | 7-271 |
| Cow position: | chr29:292493-292232 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 200 |
| Conread position: | 7-271 |
| Cow position: | chr29:13128144-13128405 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 201 |
| Conread position: | 7-276 |
| Cow position: | chr29:5238491-5238225 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 200 |
| Conread position: | 7-276 |
| Cow position: | chr29:5241401-5241135 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 200 |
| Conread position: | 8-276 |
| Cow position: | chr29:4327266-4327003 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 11 |
| Conread position: | 9-271 |
| Cow position: | chr29:1479454-1479196 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 197 |
| Conread position: | 9-271 |
| Cow position: | chr29:2401358-2401099 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr29:4611364-4611106 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr29:6878930-6879190 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 9-271 |
| Cow position: | chr29:15116523-15116783 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr29:16067356-16067097 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr29:21227979-21227720 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 9-271 |
| Cow position: | chr29:24013505-24013246 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 195 |
| Conread position: | 9-271 |
| Cow position: | chr29:32555744-32556002 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 51 |
| Conread position: | 9-271 |
| Cow position: | chr29:45650572-45650817 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 221, 10 |
| Conread position: | 9-276 |
| Cow position: | chr29:20429202-20429455 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 35 |
| Conread position: | 9-290 |
| Cow position: | chr29:24121088-24121365 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 181, 168 |
| Conread position: | 9-290 |
| Cow position: | chr29:39213846-39214120 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 199 |
| Conread position: | 10-276 |
| Cow position: | chr29:1956319-1956583 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 10-319 |
| Cow position: | chr29:19891561-19891261 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 52 |
| Conread position: | 11-271 |
| Cow position: | chr29:25775275-25775535 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 200 |
| Conread position: | 27-270 |
| Cow position: | chr29:34774110-34774350 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 173 |
| Conread position: | 28-265 |
| Cow position: | chr29:16011993-16012222 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 32 |
| Conread position: | 37-271 |
| Cow position: | chr29:7848366-7848136 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 191, 166 |
| Conread position: | 38-271 |
| Cow position: | chr29:2984595-2984368 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 39-271 |
| Cow position: | chr29:19792526-19792754 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 202, 161 |
| Conread position: | 43-265 |
| Cow position: | chr29:4692077-4692298 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 48-267 |
| Cow position: | chr29:35112339-35112560 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 164 |
| Conread position: | 49-264 |
| Cow position: | chr29:4002149-4001937 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 50-276 |
| Cow position: | chr29:17154215-17153988 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 120, 161 |
| Conread position: | 51-276 |
| Cow position: | chr29:37600160-37600387 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 121, 161 |
| Conread position: | 54-271 |
| Cow position: | chr29:9138029-9137811 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 159 |
| Conread position: | 55-270 |
| Cow position: | chr29:7956241-7956452 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 109, 35 |
| Conread position: | 55-276 |
| Cow position: | chr29:9911887-9911663 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 151 |
| Conread position: | 63-276 |
| Cow position: | chr29:8667527-8667320 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 22 |
| Conread position: | 70-283 |
| Cow position: | chr29:40300257-40300467 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 120, 137 |
| Conread position: | 72-270 |
| Cow position: | chr29:15762614-15762412 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 40 |
Show alignments to all cow chromosomes.