Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-319
Cow position: chr3:26920654-26920340 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 86

Conread position: 2-258
Cow position: chr3:29807218-29806969 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 188, 51

Conread position: 2-264
Cow position: chr3:79094314-79094568 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 39

Conread position: 2-264
Cow position: chr3:82056362-82056612 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 183, 17

Conread position: 2-269
Cow position: chr3:3164740-3165000 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 58

Conread position: 2-271
Cow position: chr3:364463-364718 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 188, 44

Conread position: 2-271
Cow position: chr3:15057842-15058113 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 172

Conread position: 2-271
Cow position: chr3:46900950-46900686 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 17

Conread position: 2-271
Cow position: chr3:58954054-58953782 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 51, 15

Conread position: 2-271
Cow position: chr3:68156233-68155970 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr3:2506725-2506994 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 22

Conread position: 2-276
Cow position: chr3:8901177-8900897 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 214

Conread position: 2-276
Cow position: chr3:11254393-11254661 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 111

Conread position: 2-276
Cow position: chr3:14465948-14466218 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 211

Conread position: 2-276
Cow position: chr3:15192104-15191838 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 2-276
Cow position: chr3:18393628-18393903 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 2-276
Cow position: chr3:29887668-29887933 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr3:42671076-42670809 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 15

Conread position: 2-276
Cow position: chr3:43528481-43528752 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 205

Conread position: 2-276
Cow position: chr3:48530393-48530125 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 188, 34

Conread position: 3-269
Cow position: chr3:61191162-61191424 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 139

Conread position: 3-270
Cow position: chr3:14725052-14724789 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 89

Conread position: 3-270
Cow position: chr3:22089527-22089789 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 174

Conread position: 3-270
Cow position: chr3:36570295-36570549 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 68, 36

Conread position: 3-271
Cow position: chr3:17937084-17937359 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 215

Conread position: 3-271
Cow position: chr3:20471605-20471879 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 16

Conread position: 3-276
Cow position: chr3:6689746-6689481 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 165, 57

Conread position: 3-276
Cow position: chr3:19711560-19711830 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 204

Conread position: 3-276
Cow position: chr3:35884198-35884468 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 181

Conread position: 3-276
Cow position: chr3:38346956-38346690 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 167, 45

Conread position: 3-276
Cow position: chr3:48566912-48567179 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 53

Conread position: 3-276
Cow position: chr3:79592134-79592402 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 61

Conread position: 3-292
Cow position: chr3:14456151-14456430 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 17

Conread position: 3-319
Cow position: chr3:1830808-1831127 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 276

Conread position: 4-251
Cow position: chr3:30358880-30359121 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 4-270
Cow position: chr3:2036052-2035790 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 138

Conread position: 4-276
Cow position: chr3:55085430-55085704 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 134

Conread position: 5-276
Cow position: chr3:26219308-26219575 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 198

Conread position: 5-276
Cow position: chr3:36670668-36670939 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 202

Conread position: 7-264
Cow position: chr3:24887502-24887248 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 229, 115

Conread position: 7-270
Cow position: chr3:46856462-46856720 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 183, 12

Conread position: 7-270
Cow position: chr3:47271961-47272219 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 57

Conread position: 7-270
Cow position: chr3:64294428-64294169 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 66

Conread position: 9-269
Cow position: chr3:62321386-62321649 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 79, 206

Conread position: 9-270
Cow position: chr3:20378811-20379060 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 181, 36

Conread position: 9-270
Cow position: chr3:29282671-29282413 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 194

Conread position: 9-271
Cow position: chr3:10448553-10448811 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr3:21594199-21593940 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 199

Conread position: 9-271
Cow position: chr3:47233482-47233740 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr3:51666634-51666375 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-277
Cow position: chr3:28634980-28635243 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 101

Conread position: 12-265
Cow position: chr3:50762871-50762615 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 66

Conread position: 12-271
Cow position: chr3:80082071-80082327 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 195

Conread position: 12-276
Cow position: chr3:60389390-60389135 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 91

Conread position: 13-229
Cow position: chr3:30322439-30322222 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 177, 164

Conread position: 14-276
Cow position: chr3:58767033-58766782 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 47

Conread position: 17-276
Cow position: chr3:45608756-45608500 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 140, 163

Conread position: 23-269
Cow position: chr3:44535024-44535268 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 185

Conread position: 23-276
Cow position: chr3:77188181-77187935 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 38

Conread position: 25-265
Cow position: chr3:18606820-18606577 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 189

Conread position: 26-276
Cow position: chr3:2903566-2903811 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 141, 103

Conread position: 27-270
Cow position: chr3:495553-495792 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 163, 180

Conread position: 27-270
Cow position: chr3:69419185-69419426 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 178

Conread position: 27-276
Cow position: chr3:30908215-30908467 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 18, 80

Conread position: 28-271
Cow position: chr3:73459953-73459714 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 124

Conread position: 28-276
Cow position: chr3:4087951-4088191 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 162, 43

Conread position: 30-270
Cow position: chr3:59208477-59208238 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 13, 180

Conread position: 30-276
Cow position: chr3:58033775-58034015 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 170

Conread position: 30-278
Cow position: chr3:64656100-64655857 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 160, 178

Conread position: 33-276
Cow position: chr3:524853-524614 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 74

Conread position: 36-293
Cow position: chr3:6898084-6897830 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 131, 173

Conread position: 38-262
Cow position: chr3:30384967-30384747 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 196, 82

Conread position: 38-265
Cow position: chr3:9641264-9641044 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 38

Conread position: 38-266
Cow position: chr3:33693343-33693115 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 43, 48

Conread position: 40-276
Cow position: chr3:4031633-4031401 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 150, 12

Conread position: 42-264
Cow position: chr3:76923425-76923644 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 9, 96

Conread position: 42-268
Cow position: chr3:79208275-79208495 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 74

Conread position: 42-276
Cow position: chr3:27867544-27867308 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 108, 79

Conread position: 42-276
Cow position: chr3:34392406-34392631 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 148, 122

Conread position: 42-285
Cow position: chr3:42050197-42050444 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 125, 70

Conread position: 43-204
Cow position: chr3:5416567-5416726 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 121, 0

Conread position: 43-276
Cow position: chr3:20389694-20389929 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 186
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 129, 109

Conread position: 43-276
Cow position: chr3:33254011-33254239 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 147, 103

Conread position: 49-271
Cow position: chr3:74391031-74391250 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 141, 158

Conread position: 50-262
Cow position: chr3:25691438-25691230 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 180, 156

Conread position: 51-276
Cow position: chr3:52418645-52418420 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 118, 39

Conread position: 51-288
Cow position: chr3:74233917-74233685 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 183
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 139, 115

Conread position: 52-286
Cow position: chr3:26065483-26065250 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 126

Conread position: 55-276
Cow position: chr3:18557898-18557675 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 149

Conread position: 64-268
Cow position: chr3:9639169-9639368 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 102, 88

Conread position: 64-268
Cow position: chr3:20228071-20227862 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 144

Conread position: 64-268
Cow position: chr3:29507245-29507041 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 44

Conread position: 75-270
Cow position: chr3:70321267-70321462 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 164
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 15, 135

Conread position: 84-269
Cow position: chr3:47629896-47630077 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 123

Conread position: 150-268
Cow position: chr3:15153427-15153312 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 57

Show alignments to all cow chromosomes.