Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-268
Cow position: chr5:58855909-58855647 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 18

Conread position: 1-276
Cow position: chr5:26467426-26467156 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 48

Conread position: 2-249
Cow position: chr5:49558964-49558723 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 58

Conread position: 2-264
Cow position: chr5:49820947-49820688 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 67

Conread position: 2-267
Cow position: chr5:30816520-30816257 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 201

Conread position: 2-268
Cow position: chr5:32394405-32394154 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 26

Conread position: 2-271
Cow position: chr5:6045092-6044825 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 206

Conread position: 2-271
Cow position: chr5:17384296-17384561 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 72, 89

Conread position: 2-271
Cow position: chr5:18573975-18573709 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 205

Conread position: 2-271
Cow position: chr5:19969227-19969493 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-271
Cow position: chr5:26097100-26096835 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 15

Conread position: 2-271
Cow position: chr5:41981206-41980941 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 142

Conread position: 2-271
Cow position: chr5:42673896-42673633 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 58

Conread position: 2-271
Cow position: chr5:64524075-64524342 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 60

Conread position: 2-272
Cow position: chr5:35826395-35826138 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-276
Cow position: chr5:1105066-1105326 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 188, 39

Conread position: 2-276
Cow position: chr5:12316119-12315855 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-276
Cow position: chr5:16893971-16894235 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 188, 45

Conread position: 2-276
Cow position: chr5:29827858-29827587 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr5:31469778-31470040 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 188, 94

Conread position: 2-276
Cow position: chr5:66366335-66366068 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 17

Conread position: 2-278
Cow position: chr5:35145157-35144875 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 214

Conread position: 2-283
Cow position: chr5:16508900-16508613 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 17

Conread position: 3-263
Cow position: chr5:51292924-51293190 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 41, 8

Conread position: 3-269
Cow position: chr5:70402883-70402616 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 159, 24

Conread position: 3-270
Cow position: chr5:46708985-46708723 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 115

Conread position: 3-270
Cow position: chr5:51151559-51151821 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 3-270
Cow position: chr5:52289577-52289321 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 16, 89

Conread position: 3-276
Cow position: chr5:34638689-34638427 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 67

Conread position: 3-276
Cow position: chr5:56443080-56442816 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 39

Conread position: 3-276
Cow position: chr5:60448049-60447781 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 146

Conread position: 3-285
Cow position: chr5:49912854-49912572 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 158, 17

Conread position: 4-270
Cow position: chr5:31097002-31097262 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 4-276
Cow position: chr5:39333755-39334024 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 160

Conread position: 4-276
Cow position: chr5:59303466-59303748 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 168, 15

Conread position: 4-276
Cow position: chr5:74643859-74644126 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 16

Conread position: 6-276
Cow position: chr5:59082392-59082658 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 185, 17

Conread position: 8-273
Cow position: chr5:41547208-41547468 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 182, 61

Conread position: 9-260
Cow position: chr5:26561950-26561695 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 175

Conread position: 9-270
Cow position: chr5:2427929-2428183 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 181, 198

Conread position: 9-270
Cow position: chr5:37736483-37736226 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 9-270
Cow position: chr5:39363690-39363437 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 181, 35

Conread position: 9-270
Cow position: chr5:59147429-59147172 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 194

Conread position: 9-271
Cow position: chr5:1383800-1383537 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 126, 214

Conread position: 9-271
Cow position: chr5:6616365-6616106 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr5:12324751-12325011 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr5:26074871-26075129 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 194

Conread position: 9-271
Cow position: chr5:37430693-37430952 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr5:41067821-41067563 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 181, 191

Conread position: 9-271
Cow position: chr5:51747039-51746782 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 129

Conread position: 9-271
Cow position: chr5:58202355-58202097 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 200

Conread position: 9-276
Cow position: chr5:72045843-72046110 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 82, 160

Conread position: 9-285
Cow position: chr5:6454841-6455110 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 194

Conread position: 9-315
Cow position: chr5:51858485-51858789 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 151, 15

Conread position: 12-265
Cow position: chr5:14832813-14833065 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 159, 29

Conread position: 12-271
Cow position: chr5:10260608-10260861 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 34

Conread position: 12-279
Cow position: chr5:55756647-55756908 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 165, 55

Conread position: 13-271
Cow position: chr5:24485620-24485875 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 21

Conread position: 13-272
Cow position: chr5:34463791-34464046 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 114

Conread position: 15-276
Cow position: chr5:56821045-56820796 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 45

Conread position: 22-271
Cow position: chr5:6130141-6129895 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 176

Conread position: 26-271
Cow position: chr5:5337422-5337664 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 179

Conread position: 27-276
Cow position: chr5:12323017-12323261 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 163, 33

Conread position: 30-229
Cow position: chr5:24102505-24102305 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 176, 0

Conread position: 30-271
Cow position: chr5:23641210-23641457 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 71, 22

Conread position: 38-271
Cow position: chr5:6032764-6032534 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 169

Conread position: 38-271
Cow position: chr5:34300660-34300432 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 138, 126

Conread position: 38-276
Cow position: chr5:32815650-32815410 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 122, 61

Conread position: 38-276
Cow position: chr5:47719281-47719043 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 133, 35

Conread position: 42-263
Cow position: chr5:38431827-38431611 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 37, 18

Conread position: 42-276
Cow position: chr5:31661403-31661631 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 130, 18

Conread position: 42-276
Cow position: chr5:37377629-37377403 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 148, 8

Conread position: 42-287
Cow position: chr5:59509092-59508845 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 48

Conread position: 43-265
Cow position: chr5:72007112-72007331 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 148, 161

Conread position: 44-276
Cow position: chr5:7041955-7042182 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 147, 163

Conread position: 44-276
Cow position: chr5:34115411-34115176 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 127, 169

Conread position: 48-276
Cow position: chr5:42727033-42727257 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 142, 84

Conread position: 51-276
Cow position: chr5:53835447-53835229 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 139, 9

Conread position: 51-276
Cow position: chr5:55195212-55194988 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 158

Conread position: 54-276
Cow position: chr5:43004532-43004308 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 106, 163

Conread position: 62-271
Cow position: chr5:11834408-11834616 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 11, 143

Conread position: 63-276
Cow position: chr5:64758992-64759197 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 118, 85

Conread position: 67-268
Cow position: chr5:61361401-61361604 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 94, 146

Conread position: 67-291
Cow position: chr5:34232469-34232244 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 126, 104

Conread position: 85-271
Cow position: chr5:53776204-53776021 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 105, 117

Conread position: 88-317
Cow position: chr5:31217828-31217609 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 137, 50

Conread position: 89-271
Cow position: chr5:1766576-1766756 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 101, 120

Conread position: 130-268
Cow position: chr5:75745421-75745288 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 77

Show alignments to all cow chromosomes.