Cow genome map

Conread name: Fet1-UMC-pd20fet-017-h10

Conread position: 1-276
Cow position: chr9:6952339-6952605 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 96

Conread position: 2-204
Cow position: chr9:54528765-54528967 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-234
Cow position: chr9:10308757-10308533 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 185, 86

Conread position: 2-271
Cow position: chr9:13186476-13186211 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 23

Conread position: 2-271
Cow position: chr9:28773367-28773634 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 205

Conread position: 2-271
Cow position: chr9:38184228-38183962 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 205

Conread position: 2-271
Cow position: chr9:44467099-44466837 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 187, 155

Conread position: 2-271
Cow position: chr9:46316538-46316273 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 201

Conread position: 2-271
Cow position: chr9:59507318-59507587 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 208

Conread position: 2-276
Cow position: chr9:7410032-7410300 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 125

Conread position: 2-276
Cow position: chr9:11299447-11299170 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 88

Conread position: 2-276
Cow position: chr9:15982829-15982561 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 60

Conread position: 2-276
Cow position: chr9:16218393-16218127 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 2-276
Cow position: chr9:16300321-16300049 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 177

Conread position: 2-276
Cow position: chr9:18381109-18381378 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 182

Conread position: 2-276
Cow position: chr9:19539347-19539616 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 99

Conread position: 2-276
Cow position: chr9:20393878-20393609 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 145

Conread position: 2-276
Cow position: chr9:24726428-24726158 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 99

Conread position: 2-276
Cow position: chr9:29338783-29338515 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 59

Conread position: 2-276
Cow position: chr9:37017134-37017405 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 205

Conread position: 2-276
Cow position: chr9:37510267-37510533 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 130

Conread position: 2-276
Cow position: chr9:52407420-52407683 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 78

Conread position: 3-271
Cow position: chr9:2858792-2859055 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 196, 19

Conread position: 3-271
Cow position: chr9:27085708-27085985 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 41, 212

Conread position: 3-276
Cow position: chr9:48374263-48374537 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 40, 14

Conread position: 3-282
Cow position: chr9:26065168-26064900 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 204

Conread position: 4-270
Cow position: chr9:30162449-30162711 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 64

Conread position: 4-270
Cow position: chr9:30722195-30722441 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 186, 37

Conread position: 4-270
Cow position: chr9:32238634-32238898 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 201

Conread position: 4-276
Cow position: chr9:10634766-10634509 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 68

Conread position: 4-276
Cow position: chr9:26115598-26115331 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 101

Conread position: 4-276
Cow position: chr9:44500591-44500323 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 173

Conread position: 4-391
Cow position: chr9:28747270-28746896 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 56

Conread position: 5-270
Cow position: chr9:1463951-1464212 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 153

Conread position: 6-271
Cow position: chr9:19743230-19743495 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 204

Conread position: 6-276
Cow position: chr9:4928883-4929141 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 49

Conread position: 6-276
Cow position: chr9:27892379-27892106 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 145, 203

Conread position: 7-270
Cow position: chr9:59478954-59479225 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 211

Conread position: 7-271
Cow position: chr9:17879823-17879563 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 151

Conread position: 8-270
Cow position: chr9:38753932-38753661 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 9-265
Cow position: chr9:34000356-34000103 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 49

Conread position: 9-269
Cow position: chr9:3387947-3388204 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 170

Conread position: 9-270
Cow position: chr9:6253454-6253197 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 195

Conread position: 9-271
Cow position: chr9:1296026-1296285 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 195

Conread position: 9-271
Cow position: chr9:3996880-3997141 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 37, 201

Conread position: 9-271
Cow position: chr9:4939603-4939862 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr9:10803560-10803304 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 116

Conread position: 9-271
Cow position: chr9:18478005-18478264 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 194

Conread position: 9-271
Cow position: chr9:25996751-25997013 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 209

Conread position: 9-271
Cow position: chr9:30187595-30187337 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 199

Conread position: 9-271
Cow position: chr9:34237865-34238123 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 197

Conread position: 9-271
Cow position: chr9:37108997-37108738 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 9-271
Cow position: chr9:43494939-43494680 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 9-271
Cow position: chr9:44822049-44821789 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 40, 27

Conread position: 9-276
Cow position: chr9:43642763-43643022 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 95, 11

Conread position: 9-276
Cow position: chr9:44202201-44202453 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 57

Conread position: 9-278
Cow position: chr9:33056075-33056347 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 52, 10

Conread position: 9-317
Cow position: chr9:9610996-9611299 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 198

Conread position: 10-291
Cow position: chr9:62442539-62442825 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 160, 209

Conread position: 10-317
Cow position: chr9:11841270-11841572 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 198

Conread position: 11-271
Cow position: chr9:18426987-18427248 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 222

Conread position: 12-265
Cow position: chr9:53109782-53110030 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 86

Conread position: 12-271
Cow position: chr9:3004453-3004713 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 202

Conread position: 14-276
Cow position: chr9:36507001-36506741 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 143, 6

Conread position: 29-317
Cow position: chr9:25238548-25238828 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 133, 21

Conread position: 30-276
Cow position: chr9:23541168-23540923 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 19, 40

Conread position: 31-201
Cow position: chr9:29191846-29192016 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 36-270
Cow position: chr9:35203186-35203416 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 78, 16

Conread position: 39-276
Cow position: chr9:25546963-25547193 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 151, 21

Conread position: 40-265
Cow position: chr9:30138435-30138665 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 150, 20

Conread position: 42-268
Cow position: chr9:28656924-28657146 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 164, 0

Conread position: 42-269
Cow position: chr9:8338340-8338564 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 165

Conread position: 42-270
Cow position: chr9:34467371-34467157 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 43-265
Cow position: chr9:2119737-2119524 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 86

Conread position: 43-271
Cow position: chr9:1984215-1983990 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 164

Conread position: 45-271
Cow position: chr9:8289262-8289494 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 87, 188

Conread position: 46-276
Cow position: chr9:29330356-29330135 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 62

Conread position: 48-276
Cow position: chr9:8234424-8234655 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 133, 80

Conread position: 49-271
Cow position: chr9:20900818-20900599 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 141, 158

Conread position: 50-261
Cow position: chr9:31062532-31062319 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 121, 162

Conread position: 50-276
Cow position: chr9:33078011-33077780 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 110, 20

Conread position: 51-276
Cow position: chr9:42628385-42628157 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 121, 162

Conread position: 51-276
Cow position: chr9:53531546-53531319 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 110, 41

Conread position: 55-276
Cow position: chr9:52633207-52632994 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 175, 116

Conread position: 63-276
Cow position: chr9:44914801-44914593 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 127, 71

Conread position: 65-276
Cow position: chr9:11313201-11312994 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 125, 142

Conread position: 93-270
Cow position: chr9:36483222-36483395 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 138, 113

Conread position: 100-276
Cow position: chr9:5327568-5327741 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 90, 107

Conread position: 106-276
Cow position: chr9:3730780-3730616 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 45

Conread position: 120-276
Cow position: chr9:21840503-21840656 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 70, 88

Show alignments to all cow chromosomes.