Cow genome map
| Conread name: | Liv1-LVR010001E10 | 
| Conread position: | 1-141 | 
| Cow position: | chr6:65896500-65896359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 1-149 | 
| Cow position: | chr6:3685340-3685493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 1-162 | 
| Cow position: | chr6:41676389-41676550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 100, 74 | 
| Conread position: | 1-176 | 
| Cow position: | chr6:42266185-42266363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 1-328 | 
| Cow position: | chr6:3573234-3573587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 1-463 | 
| Cow position: | chr6:1796214-1795712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 48 | 
| Conread position: | 1-503 | 
| Cow position: | chr6:2377153-2377700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 1-678 | 
| Cow position: | chr6:50720560-50721289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 738 | 
| Alignm identity: | 521 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 48 | 
| Conread position: | 1-708 | 
| Cow position: | chr6:40159053-40158294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 766 | 
| Alignm identity: | 522 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 134 | 
| Conread position: | 1-711 | 
| Cow position: | chr6:14840313-14841057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 770 | 
| Alignm identity: | 529 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 26 | 
| Conread position: | 1-769 | 
| Cow position: | chr6:38874209-38873377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 836 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 455 | 
| Conread position: | 1-785 | 
| Cow position: | chr6:14927910-14928759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 850 | 
| Alignm identity: | 616 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 1-809 | 
| Cow position: | chr6:3273027-3272158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 875 | 
| Alignm identity: | 639 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 38 | 
| Conread position: | 1-809 | 
| Cow position: | chr6:12628368-12629220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 861 | 
| Alignm identity: | 599 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 68 | 
| Conread position: | 1-809 | 
| Cow position: | chr6:41230948-41231812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 871 | 
| Alignm identity: | 624 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 138 | 
| Conread position: | 1-810 | 
| Cow position: | chr6:55238144-55239015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 878 | 
| Alignm identity: | 640 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 688 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:3151678-3152541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 623 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 808 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:10235660-10236521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 867 | 
| Alignm identity: | 613 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 36 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:16767385-16766516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 876 | 
| Alignm identity: | 647 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 423 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:21833197-21832335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 868 | 
| Alignm identity: | 617 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 118 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:28001932-28001070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 868 | 
| Alignm identity: | 634 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 732 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:37387031-37387892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 877 | 
| Alignm identity: | 626 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 430 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:40277523-40278379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 869 | 
| Alignm identity: | 616 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 48 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:51149390-51150268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 879 | 
| Alignm identity: | 629 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:53936177-53935312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 874 | 
| Alignm identity: | 634 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 623 | 
| Conread position: | 1-811 | 
| Cow position: | chr6:65820133-65819256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 880 | 
| Alignm identity: | 633 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 751 | 
| Conread position: | 2-811 | 
| Cow position: | chr6:35417467-35416647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 852 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 125 | 
| Conread position: | 3-147 | 
| Cow position: | chr6:58030367-58030513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 7-811 | 
| Cow position: | chr6:50570656-50571517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 872 | 
| Alignm identity: | 626 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 379 | 
| Conread position: | 10-811 | 
| Cow position: | chr6:47040740-47039884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 858 | 
| Alignm identity: | 626 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 763 | 
| Conread position: | 24-707 | 
| Cow position: | chr6:8536821-8536073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 751 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 283 | 
| Conread position: | 38-811 | 
| Cow position: | chr6:16704237-16703412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 844 | 
| Alignm identity: | 608 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 31 | 
| Conread position: | 51-811 | 
| Cow position: | chr6:38989273-38988499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 797 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 117 | 
| Conread position: | 64-767 | 
| Cow position: | chr6:9734440-9733689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 756 | 
| Alignm identity: | 523 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 51 | 
| Conread position: | 162-415 | 
| Cow position: | chr6:705514-705775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 18, 5 | 
| Conread position: | 175-811 | 
| Cow position: | chr6:16419020-16418356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 673 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 13 | 
| Conread position: | 191-771 | 
| Cow position: | chr6:65929928-65930544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 15 | 
| Conread position: | 207-811 | 
| Cow position: | chr6:60875992-60876622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 443 | 
| Conread position: | 208-771 | 
| Cow position: | chr6:28488871-28488292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 100 | 
| Conread position: | 208-811 | 
| Cow position: | chr6:50636984-50637595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 227 | 
| Conread position: | 211-401 | 
| Cow position: | chr6:66562224-66562421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 211-429 | 
| Cow position: | chr6:27527289-27527065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 211-455 | 
| Cow position: | chr6:39435224-39434968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 211-595 | 
| Cow position: | chr6:8756120-8755710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 211-610 | 
| Cow position: | chr6:43778216-43778640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 414 | 
| Conread position: | 211-640 | 
| Cow position: | chr6:62577485-62577030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 211-652 | 
| Cow position: | chr6:52696335-52696797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 192 | 
| Conread position: | 211-707 | 
| Cow position: | chr6:43790881-43790354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 211-707 | 
| Cow position: | chr6:48875634-48875118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 275 | 
| Conread position: | 211-804 | 
| Cow position: | chr6:25790999-25790382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 498 | 
| Conread position: | 211-809 | 
| Cow position: | chr6:20450665-20451284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 475 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 196 | 
| Conread position: | 211-810 | 
| Cow position: | chr6:39331833-39331208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 177 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:328662-328037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:478248-478876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 181 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:1536407-1537031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 143 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:3886809-3886179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 432 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:8204877-8205513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 279 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:16592665-16593276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 258 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:17121085-17121715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 304 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:19713534-19712919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 19 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:24241988-24242613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 475 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 371 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:26772424-26771796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 577 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:27475111-27475732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 501 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:30270206-30269576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:34493374-34494001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:34504825-34504195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:34844015-34843387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 116 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:36530981-36531600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 96 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:41192018-41192651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 617 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:44018131-44017502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 209 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:51717243-51717880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 260 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:51732779-51733407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 470 | 
| Conread position: | 211-811 | 
| Cow position: | chr6:64719018-64719644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 212-811 | 
| Cow position: | chr6:37385853-37386473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 17 | 
| Conread position: | 215-685 | 
| Cow position: | chr6:34129158-34129657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 252 | 
| Conread position: | 226-455 | 
| Cow position: | chr6:64425208-64425444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 45, 98 | 
| Conread position: | 226-498 | 
| Cow position: | chr6:28171615-28171895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 226-785 | 
| Cow position: | chr6:182831-182245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 480 | 
| Conread position: | 226-790 | 
| Cow position: | chr6:916755-917348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 226-791 | 
| Cow position: | chr6:41408118-41408710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 507 | 
| Conread position: | 226-808 | 
| Cow position: | chr6:40974898-40975491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 483 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:3485686-3485093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 251 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:11722483-11721882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 213 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:15138454-15137847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 245 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:25358169-25357541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:28103152-28102543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 444 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 363 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:35874000-35873403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 174 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:39999744-39999133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 482 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:50486062-50485458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 391 | 
| Conread position: | 226-811 | 
| Cow position: | chr6:55539557-55538945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 112 | 
| Conread position: | 227-360 | 
| Cow position: | chr6:13979476-13979612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 227-401 | 
| Cow position: | chr6:46296986-46297167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-427 | 
| Cow position: | chr6:40759163-40759365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 70, 158 | 
| Conread position: | 227-503 | 
| Cow position: | chr6:21711274-21711557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 227-533 | 
| Cow position: | chr6:18986729-18987046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 45, 108 | 
| Conread position: | 227-594 | 
| Cow position: | chr6:41389739-41389350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 340 | 
| Conread position: | 227-627 | 
| Cow position: | chr6:45591261-45591687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-653 | 
| Cow position: | chr6:11829913-11829465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 88 | 
| Conread position: | 227-677 | 
| Cow position: | chr6:24584652-24584187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 150 | 
| Conread position: | 227-739 | 
| Cow position: | chr6:2581131-2581655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 81 | 
| Conread position: | 227-785 | 
| Cow position: | chr6:43087879-43087298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 390 | 
| Conread position: | 227-808 | 
| Cow position: | chr6:11019370-11019981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-808 | 
| Cow position: | chr6:15924876-15924276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 228 | 
| Conread position: | 227-809 | 
| Cow position: | chr6:4904261-4903677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 56 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:2367519-2366936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 117 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:6120266-6119667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 232 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:7138627-7138016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 530 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:7467938-7467325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 585 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:9738545-9737928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 394 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:10043928-10044541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:10611537-10612157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 225 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:10651072-10650468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 62 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:11354450-11353847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 216 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:11870218-11869608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 178 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:13308672-13308072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 333 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:16050577-16049967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 472 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:19104196-19103582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:28064704-28065316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 555 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:28160131-28160735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 87 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:39912038-39912648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 369 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:39956781-39957392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 129, 10 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:41676651-41677255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 65 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:42266449-42267054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 421 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:43620444-43621057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:44147235-44146621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:44950748-44950132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 525 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:51867708-51868313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 417 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:53462439-53461853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 611 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 151 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:56452382-56451769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:59618779-59619402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 227-811 | 
| Cow position: | chr6:68029890-68030505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 228-811 | 
| Cow position: | chr6:5947062-5946449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 158 | 
| Conread position: | 230-811 | 
| Cow position: | chr6:33465678-33466283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 294 | 
| Conread position: | 230-811 | 
| Cow position: | chr6:53810333-53810913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 606 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 231-424 | 
| Cow position: | chr6:52194252-52194052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 41, 116 | 
| Conread position: | 231-785 | 
| Cow position: | chr6:28550360-28549756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 287 | 
| Conread position: | 231-810 | 
| Cow position: | chr6:43330694-43330098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 606 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 43, 134 | 
| Conread position: | 231-811 | 
| Cow position: | chr6:26668307-26667698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 233-811 | 
| Cow position: | chr6:43186823-43187435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 444 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 242-809 | 
| Cow position: | chr6:20553513-20552919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 533 | 
| Conread position: | 242-811 | 
| Cow position: | chr6:34074587-34075193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 184 | 
| Conread position: | 243-544 | 
| Cow position: | chr6:57472683-57472982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 30, 59 | 
| Conread position: | 247-811 | 
| Cow position: | chr6:11289723-11289141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 489 | 
| Conread position: | 249-808 | 
| Cow position: | chr6:11168241-11168830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 237 | 
| Conread position: | 252-811 | 
| Cow position: | chr6:33950411-33949833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 221 | 
| Conread position: | 270-811 | 
| Cow position: | chr6:31010052-31009495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 336 | 
| Conread position: | 273-811 | 
| Cow position: | chr6:55474066-55474632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 226 | 
| Conread position: | 276-811 | 
| Cow position: | chr6:52249737-52249188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 169 | 
| Conread position: | 277-811 | 
| Cow position: | chr6:59596026-59596567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 170 | 
| Conread position: | 288-811 | 
| Cow position: | chr6:15276464-15275914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 224 | 
| Conread position: | 292-811 | 
| Cow position: | chr6:46947600-46948142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 34 | 
| Conread position: | 296-811 | 
| Cow position: | chr6:67553022-67553558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 0 | 
| Conread position: | 311-811 | 
| Cow position: | chr6:14143833-14144344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 189 | 
| Conread position: | 311-811 | 
| Cow position: | chr6:53543678-53543157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 101 | 
| Conread position: | 311-811 | 
| Cow position: | chr6:65875481-65874958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 64 | 
| Conread position: | 313-811 | 
| Cow position: | chr6:40550896-40550374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 132 | 
| Conread position: | 318-803 | 
| Cow position: | chr6:14950859-14950334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 318-811 | 
| Cow position: | chr6:50121120-50120604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 292 | 
| Conread position: | 329-811 | 
| Cow position: | chr6:3119717-3119211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 28 | 
| Conread position: | 329-811 | 
| Cow position: | chr6:3573615-3574112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 69 | 
| Conread position: | 331-773 | 
| Cow position: | chr6:57181640-57182102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 269 | 
| Conread position: | 331-809 | 
| Cow position: | chr6:530060-529568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 54 | 
| Conread position: | 337-809 | 
| Cow position: | chr6:58605356-58605851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 377 | 
| Conread position: | 337-811 | 
| Cow position: | chr6:24632418-24631920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 112 | 
| Conread position: | 342-811 | 
| Cow position: | chr6:6182872-6182393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 35 | 
| Conread position: | 349-809 | 
| Cow position: | chr6:10571052-10570565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 172, 73 | 
| Conread position: | 349-811 | 
| Cow position: | chr6:22044166-22043683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 430 | 
| Conread position: | 349-811 | 
| Cow position: | chr6:30317099-30316615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 31 | 
| Conread position: | 349-811 | 
| Cow position: | chr6:60332185-60332669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 352-811 | 
| Cow position: | chr6:58030625-58031103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 291 | 
| Conread position: | 368-811 | 
| Cow position: | chr6:32419814-32420274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 54 | 
| Conread position: | 376-811 | 
| Cow position: | chr6:1498070-1498524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 113 | 
| Conread position: | 388-805 | 
| Cow position: | chr6:33508146-33508560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 117, 215 | 
| Conread position: | 389-809 | 
| Cow position: | chr6:705887-706322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 168 | 
| Conread position: | 390-786 | 
| Cow position: | chr6:4388619-4389042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 390-809 | 
| Cow position: | chr6:55945542-55945101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 129, 191 | 
| Conread position: | 406-811 | 
| Cow position: | chr6:8634401-8633988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 62, 54 | 
| Conread position: | 408-792 | 
| Cow position: | chr6:55042220-55041820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 104, 42 | 
| Conread position: | 408-803 | 
| Cow position: | chr6:6595324-6595743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 412-775 | 
| Cow position: | chr6:16699111-16699481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 253 | 
| Conread position: | 414-809 | 
| Cow position: | chr6:618323-618736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 168 | 
| Conread position: | 416-811 | 
| Cow position: | chr6:65848453-65848043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 50 | 
| Conread position: | 423-811 | 
| Cow position: | chr6:33983739-33984141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 100 | 
| Conread position: | 425-811 | 
| Cow position: | chr6:27527041-27526637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 192 | 
| Conread position: | 438-810 | 
| Cow position: | chr6:47171013-47171387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 171 | 
| Conread position: | 441-809 | 
| Cow position: | chr6:58016293-58016673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 13 | 
| Conread position: | 441-811 | 
| Cow position: | chr6:2089217-2089600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 201 | 
| Conread position: | 441-811 | 
| Cow position: | chr6:47150035-47149646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 155 | 
| Conread position: | 441-811 | 
| Cow position: | chr6:47573736-47574116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 53, 31 | 
| Conread position: | 442-745 | 
| Cow position: | chr6:40759965-40760281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 74, 167 | 
| Conread position: | 443-811 | 
| Cow position: | chr6:45736880-45736542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 443-811 | 
| Cow position: | chr6:50113626-50114006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 50 | 
| Conread position: | 448-807 | 
| Cow position: | chr6:16674645-16675002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 112, 15 | 
| Conread position: | 449-809 | 
| Cow position: | chr6:727678-727301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 141 | 
| Conread position: | 451-811 | 
| Cow position: | chr6:38438550-38438932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 455-792 | 
| Cow position: | chr6:65892920-65892566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 12 | 
| Conread position: | 507-808 | 
| Cow position: | chr6:49761482-49761787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 38 | 
| Conread position: | 511-809 | 
| Cow position: | chr6:46633142-46633442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 34 | 
| Conread position: | 515-811 | 
| Cow position: | chr6:452236-451937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 30 | 
| Conread position: | 515-811 | 
| Cow position: | chr6:21711733-21712032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 30 | 
| Conread position: | 515-811 | 
| Cow position: | chr6:23880029-23879730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 30 | 
| Conread position: | 519-808 | 
| Cow position: | chr6:18987175-18987453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 25 | 
| Conread position: | 519-811 | 
| Cow position: | chr6:224476-224180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 246 | 
| Conread position: | 519-811 | 
| Cow position: | chr6:17556640-17556347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 25 | 
| Conread position: | 528-811 | 
| Cow position: | chr6:28844616-28844341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 120, 18 | 
| Conread position: | 537-811 | 
| Cow position: | chr6:1834045-1834321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 7 | 
| Conread position: | 539-811 | 
| Cow position: | chr6:6944888-6944622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 80 | 
| Conread position: | 542-811 | 
| Cow position: | chr6:1796680-1796951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 160 | 
| Conread position: | 542-811 | 
| Cow position: | chr6:18804005-18803733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 78 | 
| Conread position: | 542-811 | 
| Cow position: | chr6:46764349-46764080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 186 | 
| Conread position: | 544-809 | 
| Cow position: | chr6:62001284-62001020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 102, 20 | 
| Conread position: | 544-810 | 
| Cow position: | chr6:40813421-40813686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 243 | 
| Conread position: | 544-811 | 
| Cow position: | chr6:2087578-2087849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 101, 181 | 
| Conread position: | 544-811 | 
| Cow position: | chr6:13591369-13591638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 102, 130 | 
| Conread position: | 544-811 | 
| Cow position: | chr6:17049429-17049699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 544-811 | 
| Cow position: | chr6:19441262-19441536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 57, 128 | 
| Conread position: | 544-811 | 
| Cow position: | chr6:29085319-29085056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 101, 151 | 
| Conread position: | 546-808 | 
| Cow position: | chr6:14897238-14897503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 216 | 
| Conread position: | 546-808 | 
| Cow position: | chr6:39136560-39136827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 546-808 | 
| Cow position: | chr6:43797849-43797578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 546-809 | 
| Cow position: | chr6:11639141-11638882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 94 | 
| Conread position: | 546-809 | 
| Cow position: | chr6:57856827-57857094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 546-810 | 
| Cow position: | chr6:28481394-28481653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:2186724-2186456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:2618508-2618240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:10598062-10598327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 14 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:10694771-10695048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:12926631-12926899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 129 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:16410118-16410381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 31 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:28171969-28172233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 153 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:34405359-34405627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 546-811 | 
| Cow position: | chr6:35704463-35704191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 162 | 
| Conread position: | 548-811 | 
| Cow position: | chr6:6459174-6459434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 98, 131 | 
| Conread position: | 550-811 | 
| Cow position: | chr6:46284037-46283773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 48, 55 | 
| Conread position: | 551-808 | 
| Cow position: | chr6:13314966-13314713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 191 | 
| Conread position: | 552-807 | 
| Cow position: | chr6:16624840-16625102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 7.00649e-44 | 
| Alignm gaps (pig, cow): | 94, 149 | 
| Conread position: | 552-811 | 
| Cow position: | chr6:4274133-4274395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 210 | 
| Conread position: | 553-811 | 
| Cow position: | chr6:24624073-24623817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 106 | 
| Conread position: | 554-803 | 
| Cow position: | chr6:43585419-43585173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 42, 35 | 
| Conread position: | 554-808 | 
| Cow position: | chr6:27534737-27534469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 554-811 | 
| Cow position: | chr6:10681060-10681310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 40, 133 | 
| Conread position: | 554-811 | 
| Cow position: | chr6:15181231-15181483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 92, 21 | 
| Conread position: | 555-809 | 
| Cow position: | chr6:24126520-24126271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 90, 19 | 
| Conread position: | 556-808 | 
| Cow position: | chr6:42988732-42988482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 101, 126 | 
| Conread position: | 556-811 | 
| Cow position: | chr6:52557563-52557325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 54 | 
| Conread position: | 558-750 | 
| Cow position: | chr6:28112986-28112791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 32, 43 | 
| Conread position: | 558-809 | 
| Cow position: | chr6:14264184-14263932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 35 | 
| Conread position: | 564-811 | 
| Cow position: | chr6:25180106-25179859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 148 | 
| Conread position: | 565-811 | 
| Cow position: | chr6:19718662-19718911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 565-811 | 
| Cow position: | chr6:55593147-55593396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 568-811 | 
| Cow position: | chr6:65909408-65909653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 78, 38 | 
| Conread position: | 572-809 | 
| Cow position: | chr6:67098318-67098552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 73, 38 | 
| Conread position: | 572-811 | 
| Cow position: | chr6:29484064-29484304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 27, 133 | 
| Conread position: | 572-811 | 
| Cow position: | chr6:58595322-58595083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 74, 209 | 
| Conread position: | 576-808 | 
| Cow position: | chr6:62960991-62961225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 70, 47 | 
| Conread position: | 577-811 | 
| Cow position: | chr6:41531678-41531919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 35, 168 | 
| Conread position: | 585-811 | 
| Cow position: | chr6:17150077-17149841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 585-811 | 
| Cow position: | chr6:56925829-56926059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 588-788 | 
| Cow position: | chr6:16221028-16220829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 58, 80 | 
| Conread position: | 588-811 | 
| Cow position: | chr6:43778808-43779020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 58, 6 | 
| Conread position: | 590-811 | 
| Cow position: | chr6:29688967-29689182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 67, 91 | 
| Conread position: | 591-811 | 
| Cow position: | chr6:19044317-19044532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 52, 105 | 
| Conread position: | 594-811 | 
| Cow position: | chr6:21588090-21588310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 599-811 | 
| Cow position: | chr6:1263279-1263482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 47, 25 | 
| Conread position: | 599-811 | 
| Cow position: | chr6:48947544-48947331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 47, 31 | 
| Conread position: | 600-811 | 
| Cow position: | chr6:55903201-55903415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 601-800 | 
| Cow position: | chr6:33300778-33300980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 602-811 | 
| Cow position: | chr6:4467751-4467949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 48, 98 | 
| Conread position: | 602-811 | 
| Cow position: | chr6:6471819-6471610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 44, 99 | 
| Conread position: | 602-811 | 
| Cow position: | chr6:8754340-8754129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 44, 84 | 
| Conread position: | 602-811 | 
| Cow position: | chr6:45666813-45666604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 44, 66 | 
| Conread position: | 602-811 | 
| Cow position: | chr6:45792848-45793059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 44, 24 | 
| Conread position: | 611-810 | 
| Cow position: | chr6:12738591-12738792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 616-811 | 
| Cow position: | chr6:18963214-18963019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 32, 73 | 
| Conread position: | 618-810 | 
| Cow position: | chr6:54472515-54472321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 28, 88 | 
| Conread position: | 624-811 | 
| Cow position: | chr6:40251661-40251473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 22, 62 | 
| Conread position: | 627-811 | 
| Cow position: | chr6:12388315-12388136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 19, 67 | 
| Conread position: | 633-811 | 
| Cow position: | chr6:7215942-7216121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 635-808 | 
| Cow position: | chr6:1818616-1818440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 637-811 | 
| Cow position: | chr6:5096650-5096483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 644-811 | 
| Cow position: | chr6:2111241-2111074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 16, 116 | 
| Conread position: | 644-811 | 
| Cow position: | chr6:17344358-17344525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 13, 40 | 
| Conread position: | 644-811 | 
| Cow position: | chr6:46225804-46225636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 644-811 | 
| Cow position: | chr6:57383574-57383742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 659-811 | 
| Cow position: | chr6:7448669-7448821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 659-811 | 
| Cow position: | chr6:12099688-12099830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 659-811 | 
| Cow position: | chr6:18912560-18912408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 659-811 | 
| Cow position: | chr6:20268138-20267988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 659-811 | 
| Cow position: | chr6:27887086-27887238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 660-811 | 
| Cow position: | chr6:44510265-44510413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 664-790 | 
| Cow position: | chr6:10605158-10605033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 666-811 | 
| Cow position: | chr6:50801457-50801314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 43, 55 | 
| Conread position: | 671-801 | 
| Cow position: | chr6:54887405-54887276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 671-811 | 
| Cow position: | chr6:1109193-1109334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 677-811 | 
| Cow position: | chr6:65860568-65860700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 689-811 | 
| Cow position: | chr6:3445837-3445715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 695-811 | 
| Cow position: | chr6:63041119-63041003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 732-811 | 
| Cow position: | chr6:10266880-10266801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 80 | 
| Alignm identity: | 72 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 733-809 | 
| Cow position: | chr6:43790120-43790044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 77 | 
| Alignm identity: | 72 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 733-811 | 
| Cow position: | chr6:1245673-1245595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 79 | 
| Alignm identity: | 74 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 734-811 | 
| Cow position: | chr6:52696833-52696910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 78 | 
| Alignm identity: | 72 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 740-811 | 
| Cow position: | chr6:61632388-61632459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 72 | 
| Alignm identity: | 70 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
Show alignments to all cow chromosomes.
