Cow genome map
| Conread name: | Liv1-LVR010054B02 | 
| Conread position: | 1-765 | 
| Cow position: | chr3:17937093-17937858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 565 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 28 | 
| Conread position: | 2-800 | 
| Cow position: | chr3:38497697-38496915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 818 | 
| Alignm identity: | 577 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 19 | 
| Conread position: | 15-765 | 
| Cow position: | chr3:22221043-22220296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 32 | 
| Conread position: | 15-800 | 
| Cow position: | chr3:42847257-42846465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 809 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 151 | 
| Conread position: | 19-201 | 
| Cow position: | chr3:74088422-74088598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 58, 28 | 
| Conread position: | 23-798 | 
| Cow position: | chr3:65537017-65536235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 801 | 
| Alignm identity: | 566 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 15 | 
| Conread position: | 24-778 | 
| Cow position: | chr3:27867564-27866800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 99 | 
| Conread position: | 25-800 | 
| Cow position: | chr3:18352459-18353252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 807 | 
| Alignm identity: | 574 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 9 | 
| Conread position: | 27-800 | 
| Cow position: | chr3:19717358-19718148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 805 | 
| Alignm identity: | 570 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 39 | 
| Conread position: | 28-413 | 
| Cow position: | chr3:32869851-32869466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 15 | 
| Conread position: | 28-425 | 
| Cow position: | chr3:83485832-83485447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 44, 19 | 
| Conread position: | 28-448 | 
| Cow position: | chr3:42914155-42913735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 110 | 
| Conread position: | 28-690 | 
| Cow position: | chr3:39970162-39970829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 692 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 25 | 
| Conread position: | 28-800 | 
| Cow position: | chr3:33468768-33469539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 792 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 142 | 
| Conread position: | 28-800 | 
| Cow position: | chr3:49388550-49387771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 797 | 
| Alignm identity: | 569 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 41 | 
| Conread position: | 28-800 | 
| Cow position: | chr3:53414912-53414135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 536 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 278 | 
| Conread position: | 28-800 | 
| Cow position: | chr3:59333463-59332700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 59 | 
| Conread position: | 32-800 | 
| Cow position: | chr3:77365798-77366565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 804 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 54 | 
| Conread position: | 34-800 | 
| Cow position: | chr3:54862722-54863503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 801 | 
| Alignm identity: | 566 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 70 | 
| Conread position: | 34-800 | 
| Cow position: | chr3:65581308-65582076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 540 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 290 | 
| Conread position: | 36-316 | 
| Cow position: | chr3:47987353-47987078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 36, 11 | 
| Conread position: | 36-513 | 
| Cow position: | chr3:38324001-38324475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 36, 13 | 
| Conread position: | 37-370 | 
| Cow position: | chr3:32772957-32772618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 34, 10 | 
| Conread position: | 38-169 | 
| Cow position: | chr3:21341243-21341374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-225 | 
| Cow position: | chr3:50614365-50614178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-233 | 
| Cow position: | chr3:66738493-66738297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-243 | 
| Cow position: | chr3:6262786-6262587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-244 | 
| Cow position: | chr3:72174127-72174327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-254 | 
| Cow position: | chr3:30358914-30359121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-256 | 
| Cow position: | chr3:69486425-69486213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-257 | 
| Cow position: | chr3:29560197-29560410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-259 | 
| Cow position: | chr3:17263103-17263319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-265 | 
| Cow position: | chr3:60514221-60514443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-266 | 
| Cow position: | chr3:13275330-13275553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-266 | 
| Cow position: | chr3:35805701-35805478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-269 | 
| Cow position: | chr3:20561989-20562217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-272 | 
| Cow position: | chr3:6898082-6897851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-273 | 
| Cow position: | chr3:43633963-43634193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-273 | 
| Cow position: | chr3:51666605-51666375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-284 | 
| Cow position: | chr3:50941124-50941365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-286 | 
| Cow position: | chr3:1760379-1760136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-286 | 
| Cow position: | chr3:64654523-64654280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-292 | 
| Cow position: | chr3:40205314-40205563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-295 | 
| Cow position: | chr3:7280546-7280294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-313 | 
| Cow position: | chr3:43463570-43463840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-315 | 
| Cow position: | chr3:36014046-36013773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-316 | 
| Cow position: | chr3:13326444-13326717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-316 | 
| Cow position: | chr3:47233511-47233784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-319 | 
| Cow position: | chr3:47720135-47719859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-319 | 
| Cow position: | chr3:54573050-54573322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-319 | 
| Cow position: | chr3:61183350-61183070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 23, 12 | 
| Conread position: | 38-319 | 
| Cow position: | chr3:61200678-61200402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-319 | 
| Cow position: | chr3:81064313-81064037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-324 | 
| Cow position: | chr3:67196440-67196721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-346 | 
| Cow position: | chr3:15687801-15688100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-353 | 
| Cow position: | chr3:55837730-55837423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-356 | 
| Cow position: | chr3:30301878-30301570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-365 | 
| Cow position: | chr3:40052033-40051712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-368 | 
| Cow position: | chr3:34819500-34819822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-377 | 
| Cow position: | chr3:49119312-49119645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-379 | 
| Cow position: | chr3:6863905-6864225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-395 | 
| Cow position: | chr3:7767802-7767452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-396 | 
| Cow position: | chr3:47758597-47758246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-400 | 
| Cow position: | chr3:51520178-51520533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-400 | 
| Cow position: | chr3:84598333-84598690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-405 | 
| Cow position: | chr3:31078475-31078834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-417 | 
| Cow position: | chr3:54808879-54808507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-419 | 
| Cow position: | chr3:24572182-24572550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-420 | 
| Cow position: | chr3:20388582-20388957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-420 | 
| Cow position: | chr3:20843681-20844056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-422 | 
| Cow position: | chr3:40568305-40568681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-425 | 
| Cow position: | chr3:6754573-6754194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-425 | 
| Cow position: | chr3:80444618-80444998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-428 | 
| Cow position: | chr3:40827574-40827191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-431 | 
| Cow position: | chr3:59747933-59748319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-434 | 
| Cow position: | chr3:78472102-78472491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-437 | 
| Cow position: | chr3:42277365-42277757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-445 | 
| Cow position: | chr3:64015282-64015674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-449 | 
| Cow position: | chr3:3596022-3596426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-458 | 
| Cow position: | chr3:15233274-15233687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-458 | 
| Cow position: | chr3:24343975-24344388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-459 | 
| Cow position: | chr3:19827574-19827985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-469 | 
| Cow position: | chr3:52011658-52011234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-472 | 
| Cow position: | chr3:49930357-49930784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-473 | 
| Cow position: | chr3:40194759-40194336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-474 | 
| Cow position: | chr3:11385393-11384966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-478 | 
| Cow position: | chr3:51338288-51338721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-479 | 
| Cow position: | chr3:14144692-14145126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-482 | 
| Cow position: | chr3:41569071-41569508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-485 | 
| Cow position: | chr3:53787507-53787946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-486 | 
| Cow position: | chr3:47737166-47737618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 34, 12 | 
| Conread position: | 38-487 | 
| Cow position: | chr3:11123165-11122723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-494 | 
| Cow position: | chr3:22739027-22739480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-494 | 
| Cow position: | chr3:24557687-24558136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-502 | 
| Cow position: | chr3:28668800-28669261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-515 | 
| Cow position: | chr3:29328045-29328515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-531 | 
| Cow position: | chr3:32411678-32412164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-531 | 
| Cow position: | chr3:42976427-42976912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-534 | 
| Cow position: | chr3:23598150-23598634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-541 | 
| Cow position: | chr3:29461296-29461794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-557 | 
| Cow position: | chr3:18052033-18052552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-569 | 
| Cow position: | chr3:8331165-8330633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-575 | 
| Cow position: | chr3:46261258-46260720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-622 | 
| Cow position: | chr3:45749143-45748562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-622 | 
| Cow position: | chr3:81057638-81058219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-631 | 
| Cow position: | chr3:2922518-2921929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-631 | 
| Cow position: | chr3:5988674-5989265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-631 | 
| Cow position: | chr3:30568003-30567412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-637 | 
| Cow position: | chr3:13084649-13085249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 135 | 
| Conread position: | 38-657 | 
| Cow position: | chr3:1622989-1622371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-657 | 
| Cow position: | chr3:80741759-80741141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-669 | 
| Cow position: | chr3:3372297-3372926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-670 | 
| Cow position: | chr3:58026796-58027443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-682 | 
| Cow position: | chr3:32619123-32619779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-689 | 
| Cow position: | chr3:45946637-45947286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-693 | 
| Cow position: | chr3:81374363-81375017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-697 | 
| Cow position: | chr3:52045131-52045789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-697 | 
| Cow position: | chr3:63177234-63176579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 123 | 
| Conread position: | 38-702 | 
| Cow position: | chr3:50217877-50217217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-708 | 
| Cow position: | chr3:65179262-65178591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-710 | 
| Cow position: | chr3:30328781-30329451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:4135098-4135765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 691 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 10 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:12797172-12797845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 693 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:12932655-12931983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 690 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:13361335-13360664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 11 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:16619865-16620539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 693 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:28764534-28765195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 475 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-711 | 
| Cow position: | chr3:49975641-49976310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-782 | 
| Cow position: | chr3:24433265-24432518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 764 | 
| Alignm identity: | 533 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-786 | 
| Cow position: | chr3:14923538-14922785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 771 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-788 | 
| Cow position: | chr3:24585340-24586100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 5 | 
| Conread position: | 38-794 | 
| Cow position: | chr3:56644442-56645206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-798 | 
| Cow position: | chr3:16226761-16225997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-798 | 
| Cow position: | chr3:26920617-26919843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 790 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 49 | 
| Conread position: | 38-798 | 
| Cow position: | chr3:49610327-49611087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-799 | 
| Cow position: | chr3:2075669-2074902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-799 | 
| Cow position: | chr3:68888684-68889452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:303110-302350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 779 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:5887765-5887005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:7245220-7245985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:20476387-20475633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:23203784-23204555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 792 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:24266086-24265317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:24442218-24442984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 782 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:31422226-31423008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 797 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:34503250-34504004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:36122063-36121294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 557 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:36874173-36874942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:38870454-38869686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:43189376-43190151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 792 | 
| Alignm identity: | 557 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 128 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:43524851-43525620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 546 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:46683722-46682952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:47077724-47078494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:47271992-47272760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 557 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 35 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:52149396-52150167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:54653271-54654056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 798 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:56484366-56485141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 562 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:58954020-58953275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 779 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 116 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:66967990-66968760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:74061356-74060588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 563 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:75771246-75772016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 562 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 38-800 | 
| Cow position: | chr3:78520934-78520166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 788 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 9 | 
| Conread position: | 39-766 | 
| Cow position: | chr3:72390804-72390071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 751 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 135 | 
| Conread position: | 39-791 | 
| Cow position: | chr3:35884232-35884993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 134 | 
| Conread position: | 39-799 | 
| Cow position: | chr3:24639311-24638531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 294 | 
| Conread position: | 40-567 | 
| Cow position: | chr3:50344475-50344981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 222, 99 | 
| Conread position: | 40-570 | 
| Cow position: | chr3:53935183-53934667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 127 | 
| Conread position: | 40-570 | 
| Cow position: | chr3:72131584-72132090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 17 | 
| Conread position: | 40-572 | 
| Cow position: | chr3:56335793-56336328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-616 | 
| Cow position: | chr3:77188166-77187599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 25 | 
| Conread position: | 40-625 | 
| Cow position: | chr3:45214916-45215484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 53 | 
| Conread position: | 40-630 | 
| Cow position: | chr3:64216459-64215870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 127 | 
| Conread position: | 40-648 | 
| Cow position: | chr3:28675709-28675095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 135 | 
| Conread position: | 40-655 | 
| Cow position: | chr3:18245696-18246309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 125 | 
| Conread position: | 40-665 | 
| Cow position: | chr3:45700554-45699927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 134 | 
| Conread position: | 40-709 | 
| Cow position: | chr3:64294397-64293744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 681 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 92 | 
| Conread position: | 40-711 | 
| Cow position: | chr3:17865315-17864645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 114 | 
| Conread position: | 40-711 | 
| Cow position: | chr3:73762738-73763414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 134 | 
| Conread position: | 40-716 | 
| Cow position: | chr3:18459800-18460484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 704 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-781 | 
| Cow position: | chr3:29391226-29391984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 522 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 125 | 
| Conread position: | 40-786 | 
| Cow position: | chr3:14280564-14279819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 765 | 
| Alignm identity: | 557 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 126 | 
| Conread position: | 40-787 | 
| Cow position: | chr3:27223907-27223170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 763 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 32, 114 | 
| Conread position: | 40-788 | 
| Cow position: | chr3:42603546-42602787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 32 | 
| Conread position: | 40-791 | 
| Cow position: | chr3:58767009-58766271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 773 | 
| Alignm identity: | 537 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 31 | 
| Conread position: | 40-792 | 
| Cow position: | chr3:11785239-11784490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 773 | 
| Alignm identity: | 537 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 134 | 
| Conread position: | 40-793 | 
| Cow position: | chr3:31383107-31383842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 779 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 67 | 
| Conread position: | 40-793 | 
| Cow position: | chr3:32221604-32220850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 774 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 17 | 
| Conread position: | 40-793 | 
| Cow position: | chr3:69929950-69930708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-794 | 
| Cow position: | chr3:25690508-25689782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 769 | 
| Alignm identity: | 520 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 222, 29 | 
| Conread position: | 40-794 | 
| Cow position: | chr3:45184125-45184860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 768 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 25 | 
| Conread position: | 40-794 | 
| Cow position: | chr3:58951341-58950586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 134 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:23169350-23170088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 764 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 134 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:24531555-24530822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 25 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:37972907-37972155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 540 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 84 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:40345120-40344354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 540 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 288 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:46506660-46505889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 121 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:49907146-49907912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 782 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-798 | 
| Cow position: | chr3:66829062-66829818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-799 | 
| Cow position: | chr3:226008-226766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 13 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:580068-579293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 790 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:2573416-2572646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:2628038-2627296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 769 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 51 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:2833650-2834420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:3836715-3837474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 546 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 130 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:3884306-3885080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 794 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 58 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:6442955-6442187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 121 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:6689711-6688946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 564 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 222, 17 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:6838920-6838148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 788 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:7154918-7155688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:10244548-10243778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:11418435-11417665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:13248132-13248901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 62 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:13311112-13311887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 134 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:14213271-14212509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:14465984-14466743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:14680970-14680206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 780 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:15417355-15416585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:18815377-18814625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:18863326-18862559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 555 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:19881938-19881168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:19942771-19942011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:20796181-20795412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:21178368-21179140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:21594170-21593403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 127 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:26741985-26742754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 76 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:26892379-26891609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 561 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:31022554-31021801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 125 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:31419416-31418655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 780 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:33124372-33125136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 120 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:34556501-34557251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 134 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:35044048-35043278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 563 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:35110115-35109345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 546 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:35919448-35918683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 534 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:36417628-36416858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 554 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:37894712-37893950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:38096789-38096018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:38252715-38251963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 182 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:40049774-40049008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:41018422-41019195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:41206683-41207447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 540 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:42187372-42186588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 794 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 273 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:44927702-44926932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:45978388-45977621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:48362803-48362056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 521 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:49564905-49564135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:49604559-49605323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 555 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 82 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:53519665-53518921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 534 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 222, 123 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:53879377-53880148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 554 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:56298267-56297503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 123 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:59603687-59602920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 120 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:59865368-59864601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:65474316-65473549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:65989794-65989039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 105 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:66978563-66977788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 276 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:68716823-68717591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:72633959-72633192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 113 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:73450423-73451195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 788 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 128 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:75037953-75038723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 565 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:75996998-75997770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 794 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:76000070-76000842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 568 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:76865320-76864550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:78023559-78024317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 126 | 
| Conread position: | 40-800 | 
| Cow position: | chr3:79668999-79668229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 554 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 126 | 
| Conread position: | 41-800 | 
| Cow position: | chr3:49415964-49416728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 121 | 
| Conread position: | 41-800 | 
| Cow position: | chr3:68869867-68870631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 133 | 
| Conread position: | 42-685 | 
| Cow position: | chr3:12872981-12872362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 132 | 
| Conread position: | 42-788 | 
| Cow position: | chr3:61678409-61677668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 771 | 
| Alignm identity: | 542 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 122 | 
| Conread position: | 42-790 | 
| Cow position: | chr3:34392404-34393158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 774 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 124 | 
| Conread position: | 42-793 | 
| Cow position: | chr3:31933437-31934214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 792 | 
| Alignm identity: | 570 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 298 | 
| Conread position: | 42-799 | 
| Cow position: | chr3:33633168-33633899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 769 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 83 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:2118357-2117565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 804 | 
| Alignm identity: | 565 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 126 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:5475420-5474658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 117 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:21302713-21303444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 762 | 
| Alignm identity: | 532 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 132 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:51491182-51490421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 514 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 29 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:58033785-58034518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 770 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 133 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:64172133-64171365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 782 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 12 | 
| Conread position: | 42-800 | 
| Cow position: | chr3:64375833-64376592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 123 | 
| Conread position: | 43-570 | 
| Cow position: | chr3:35578673-35578153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 147 | 
| Conread position: | 43-787 | 
| Cow position: | chr3:23216446-23217194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 131 | 
| Conread position: | 44-793 | 
| Cow position: | chr3:41057845-41057089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 774 | 
| Alignm identity: | 537 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 128 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:18758520-18759303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 798 | 
| Alignm identity: | 572 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 263 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:19884338-19883589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 770 | 
| Alignm identity: | 519 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 122 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:22723905-22724652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 108 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:42507327-42508090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 122 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:64656088-64655329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 557 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 122 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:65085818-65085053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 783 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 122 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:66887308-66888077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 122 | 
| Conread position: | 44-800 | 
| Cow position: | chr3:68696092-68696846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 93 | 
| Conread position: | 48-797 | 
| Cow position: | chr3:82932501-82931745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 778 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 39 | 
| Conread position: | 48-798 | 
| Cow position: | chr3:30352162-30351396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 785 | 
| Alignm identity: | 530 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 113 | 
| Conread position: | 48-800 | 
| Cow position: | chr3:14864752-14864003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 64 | 
| Conread position: | 48-800 | 
| Cow position: | chr3:40520059-40520821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 118 | 
| Conread position: | 49-800 | 
| Cow position: | chr3:34086347-34087079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 768 | 
| Alignm identity: | 523 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 203 | 
| Conread position: | 50-610 | 
| Cow position: | chr3:56301916-56302486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 90 | 
| Conread position: | 50-673 | 
| Cow position: | chr3:61278622-61278005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 70 | 
| Conread position: | 50-709 | 
| Cow position: | chr3:16157395-16156742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 116 | 
| Conread position: | 50-711 | 
| Cow position: | chr3:2506769-2507424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 124 | 
| Conread position: | 50-797 | 
| Cow position: | chr3:15655434-15656189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 767 | 
| Alignm identity: | 562 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 205 | 
| Conread position: | 50-800 | 
| Cow position: | chr3:2865776-2866536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 116 | 
| Conread position: | 53-788 | 
| Cow position: | chr3:12668557-12667834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 755 | 
| Alignm identity: | 524 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 113 | 
| Conread position: | 53-800 | 
| Cow position: | chr3:20378848-20379598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 770 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 107 | 
| Conread position: | 53-800 | 
| Cow position: | chr3:64318609-64317869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 548 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 91 | 
| Conread position: | 54-709 | 
| Cow position: | chr3:21100677-21100024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 669 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 112 | 
| Conread position: | 54-796 | 
| Cow position: | chr3:16715968-16716706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 760 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 39 | 
| Conread position: | 56-568 | 
| Cow position: | chr3:37909282-37909791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 16, 78 | 
| Conread position: | 56-718 | 
| Cow position: | chr3:51597788-51597145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 51 | 
| Conread position: | 56-800 | 
| Cow position: | chr3:50205445-50204684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 543 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 110 | 
| Conread position: | 56-800 | 
| Cow position: | chr3:70913380-70914144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 570 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 60 | 
| Conread position: | 57-800 | 
| Cow position: | chr3:24276426-24275688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 764 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 143 | 
| Conread position: | 58-800 | 
| Cow position: | chr3:19109440-19108677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 56 | 
| Conread position: | 59-706 | 
| Cow position: | chr3:80564659-80564017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 22 | 
| Conread position: | 59-784 | 
| Cow position: | chr3:1299960-1299233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 751 | 
| Alignm identity: | 539 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 150 | 
| Conread position: | 62-677 | 
| Cow position: | chr3:11961948-11961352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 87 | 
| Conread position: | 62-794 | 
| Cow position: | chr3:38863541-38862849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 747 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 112 | 
| Conread position: | 71-693 | 
| Cow position: | chr3:9639176-9639778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 77 | 
| Conread position: | 71-800 | 
| Cow position: | chr3:46753697-46752965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 756 | 
| Alignm identity: | 522 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 86 | 
| Conread position: | 72-800 | 
| Cow position: | chr3:23011206-23010472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 750 | 
| Alignm identity: | 532 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 87 | 
| Conread position: | 72-800 | 
| Cow position: | chr3:31225136-31224397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 758 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 22 | 
| Conread position: | 72-800 | 
| Cow position: | chr3:37628742-37628010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 743 | 
| Alignm identity: | 522 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 38 | 
| Conread position: | 72-800 | 
| Cow position: | chr3:53046955-53047674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 746 | 
| Alignm identity: | 536 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 92 | 
| Conread position: | 77-799 | 
| Cow position: | chr3:31749505-31748800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 738 | 
| Alignm identity: | 528 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 23 | 
| Conread position: | 78-770 | 
| Cow position: | chr3:45691218-45691893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 707 | 
| Alignm identity: | 514 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 138 | 
| Conread position: | 81-630 | 
| Cow position: | chr3:82513867-82513322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 65 | 
| Conread position: | 81-671 | 
| Cow position: | chr3:75479694-75479119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 19 | 
| Conread position: | 84-679 | 
| Cow position: | chr3:49132575-49133151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 285, 237 | 
| Conread position: | 87-798 | 
| Cow position: | chr3:23496908-23497637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 739 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 216, 90 | 
| Conread position: | 92-800 | 
| Cow position: | chr3:55460829-55461538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 723 | 
| Alignm identity: | 527 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 92 | 
| Conread position: | 92-800 | 
| Cow position: | chr3:63219761-63219056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 728 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 268, 55 | 
| Conread position: | 93-795 | 
| Cow position: | chr3:52651125-52651817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 716 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 49 | 
| Conread position: | 95-800 | 
| Cow position: | chr3:2851415-2852118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 728 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 5 | 
| Conread position: | 100-794 | 
| Cow position: | chr3:7678325-7677618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 725 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 60 | 
| Conread position: | 107-800 | 
| Cow position: | chr3:21778958-21779659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 716 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 57 | 
| Conread position: | 108-785 | 
| Cow position: | chr3:19752917-19753601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 699 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 56 | 
| Conread position: | 133-796 | 
| Cow position: | chr3:14285536-14284857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 691 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 206 | 
| Conread position: | 134-800 | 
| Cow position: | chr3:52256739-52257396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 38 | 
| Conread position: | 137-800 | 
| Cow position: | chr3:56149076-56148411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 27 | 
| Conread position: | 148-799 | 
| Cow position: | chr3:13886901-13886244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 156 | 
| Conread position: | 150-800 | 
| Cow position: | chr3:822306-822971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 375, 446 | 
| Conread position: | 154-800 | 
| Cow position: | chr3:42993103-42993758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 34 | 
| Conread position: | 156-632 | 
| Cow position: | chr3:37008968-37009445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 147 | 
| Conread position: | 161-800 | 
| Cow position: | chr3:22867206-22867849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 163 | 
| Conread position: | 166-573 | 
| Cow position: | chr3:68663338-68662928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 13 | 
| Conread position: | 170-798 | 
| Cow position: | chr3:37982612-37983245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 8 | 
| Conread position: | 171-711 | 
| Cow position: | chr3:18996978-18996435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 74 | 
| Conread position: | 172-570 | 
| Cow position: | chr3:73211590-73211187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 131 | 
| Conread position: | 172-794 | 
| Cow position: | chr3:49462810-49463435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 158 | 
| Conread position: | 173-800 | 
| Cow position: | chr3:43084978-43084362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 130 | 
| Conread position: | 174-785 | 
| Cow position: | chr3:51234745-51235358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 130 | 
| Conread position: | 175-794 | 
| Cow position: | chr3:37600488-37599861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 644 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 20 | 
| Conread position: | 179-800 | 
| Cow position: | chr3:40101114-40101733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 116 | 
| Conread position: | 183-800 | 
| Cow position: | chr3:48604005-48603371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 90 | 
| Conread position: | 183-800 | 
| Cow position: | chr3:72376984-72376360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 49, 140 | 
| Conread position: | 184-800 | 
| Cow position: | chr3:84199518-84198901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 129 | 
| Conread position: | 185-800 | 
| Cow position: | chr3:13034748-13035377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 117 | 
| Conread position: | 188-800 | 
| Cow position: | chr3:24352417-24351812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 34 | 
| Conread position: | 192-800 | 
| Cow position: | chr3:2707134-2707750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 138 | 
| Conread position: | 197-796 | 
| Cow position: | chr3:27213400-27212821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 107 | 
| Conread position: | 204-800 | 
| Cow position: | chr3:15662737-15663325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 107 | 
| Conread position: | 204-800 | 
| Cow position: | chr3:49336916-49336314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 116 | 
| Conread position: | 204-800 | 
| Cow position: | chr3:72174569-72175187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 48 | 
| Conread position: | 205-651 | 
| Cow position: | chr3:70891169-70890724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 91 | 
| Conread position: | 205-794 | 
| Cow position: | chr3:44536249-44536863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 123 | 
| Conread position: | 205-800 | 
| Cow position: | chr3:48273513-48272900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 99 | 
| Conread position: | 205-800 | 
| Cow position: | chr3:60184443-60185052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 125 | 
| Conread position: | 210-800 | 
| Cow position: | chr3:56697560-56696967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 121 | 
| Conread position: | 210-800 | 
| Cow position: | chr3:57456670-57456077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 606 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 91 | 
| Conread position: | 211-800 | 
| Cow position: | chr3:3301346-3300761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 91 | 
| Conread position: | 215-798 | 
| Cow position: | chr3:25057381-25056814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 110 | 
| Conread position: | 215-800 | 
| Cow position: | chr3:13275560-13276163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 611 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 87 | 
| Conread position: | 215-800 | 
| Cow position: | chr3:50921744-50921158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 109 | 
| Conread position: | 223-652 | 
| Cow position: | chr3:66047354-66047770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 39, 24 | 
| Conread position: | 233-800 | 
| Cow position: | chr3:39215075-39214491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 47 | 
| Conread position: | 239-572 | 
| Cow position: | chr3:18762161-18761825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 23, 93 | 
| Conread position: | 240-793 | 
| Cow position: | chr3:55374757-55374211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 55 | 
| Conread position: | 240-800 | 
| Cow position: | chr3:30939189-30938615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 77 | 
| Conread position: | 242-800 | 
| Cow position: | chr3:51255088-51254519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 586 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 71 | 
| Conread position: | 244-800 | 
| Cow position: | chr3:16657167-16657750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 246 | 
| Conread position: | 246-800 | 
| Cow position: | chr3:19216584-19216035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 56 | 
| Conread position: | 250-794 | 
| Cow position: | chr3:6897509-6896953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 85 | 
| Conread position: | 252-798 | 
| Cow position: | chr3:83767925-83767367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 50 | 
| Conread position: | 252-800 | 
| Cow position: | chr3:28435027-28435580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 50 | 
| Conread position: | 255-800 | 
| Cow position: | chr3:62793412-62793955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 47 | 
| Conread position: | 261-800 | 
| Cow position: | chr3:23286681-23287216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 560 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 40 | 
| Conread position: | 269-800 | 
| Cow position: | chr3:8563422-8563944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 82, 49 | 
| Conread position: | 273-800 | 
| Cow position: | chr3:12672739-12673256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 57 | 
| Conread position: | 281-800 | 
| Cow position: | chr3:6785964-6785436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 20 | 
| Conread position: | 281-800 | 
| Cow position: | chr3:60177465-60177982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 35 | 
| Conread position: | 291-800 | 
| Cow position: | chr3:54788726-54788196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 30 | 
| Conread position: | 294-800 | 
| Cow position: | chr3:45675140-45675659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 7 | 
| Conread position: | 306-771 | 
| Cow position: | chr3:20780835-20781301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 23 | 
| Conread position: | 325-800 | 
| Cow position: | chr3:26993730-26993245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 8 | 
| Conread position: | 329-793 | 
| Cow position: | chr3:65961486-65961014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 47, 72 | 
| Conread position: | 331-727 | 
| Cow position: | chr3:63275927-63276319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 29, 13 | 
| Conread position: | 331-800 | 
| Cow position: | chr3:55246147-55245662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 266 | 
| Conread position: | 332-570 | 
| Cow position: | chr3:66272607-66272366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 43, 140 | 
| Conread position: | 333-800 | 
| Cow position: | chr3:39555001-39555469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 17 | 
| Conread position: | 335-800 | 
| Cow position: | chr3:4039336-4039813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 94 | 
| Conread position: | 336-781 | 
| Cow position: | chr3:50347394-50346953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 37, 55 | 
| Conread position: | 338-800 | 
| Cow position: | chr3:24262247-24262715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 85 | 
| Conread position: | 339-665 | 
| Cow position: | chr3:36570837-36571170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 34, 62 | 
| Conread position: | 339-713 | 
| Cow position: | chr3:59607878-59607507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 31 | 
| Conread position: | 341-791 | 
| Cow position: | chr3:35056558-35056109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 87 | 
| Conread position: | 341-800 | 
| Cow position: | chr3:47987033-47986558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 252 | 
| Conread position: | 341-800 | 
| Cow position: | chr3:64654260-64653787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 67 | 
| Conread position: | 343-800 | 
| Cow position: | chr3:26660381-26660841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 8 | 
| Conread position: | 344-788 | 
| Cow position: | chr3:79596206-79595764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 190 | 
| Conread position: | 346-607 | 
| Cow position: | chr3:51439294-51439558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 29, 76 | 
| Conread position: | 350-708 | 
| Cow position: | chr3:51314654-51314300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 29, 70 | 
| Conread position: | 350-800 | 
| Cow position: | chr3:77448558-77448106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 114 | 
| Conread position: | 352-799 | 
| Cow position: | chr3:69272184-69271721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 245 | 
| Conread position: | 353-629 | 
| Cow position: | chr3:80582430-80582157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 20, 12 | 
| Conread position: | 353-787 | 
| Cow position: | chr3:174079-173636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 167 | 
| Conread position: | 359-800 | 
| Cow position: | chr3:34015987-34015530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 238 | 
| Conread position: | 362-800 | 
| Cow position: | chr3:22353187-22352736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 110 | 
| Conread position: | 364-800 | 
| Cow position: | chr3:3552881-3552441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 33 | 
| Conread position: | 364-800 | 
| Cow position: | chr3:6529563-6529111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 233 | 
| Conread position: | 365-800 | 
| Cow position: | chr3:58129654-58129209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 32 | 
| Conread position: | 372-800 | 
| Cow position: | chr3:40336584-40337027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 224 | 
| Conread position: | 373-799 | 
| Cow position: | chr3:2365356-2365778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 153, 71 | 
| Conread position: | 373-800 | 
| Cow position: | chr3:12676078-12676523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 209 | 
| Conread position: | 375-798 | 
| Cow position: | chr3:58207301-58207732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 93 | 
| Conread position: | 377-800 | 
| Cow position: | chr3:16293359-16293790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 20 | 
| Conread position: | 378-556 | 
| Cow position: | chr3:63238540-63238709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 379-565 | 
| Cow position: | chr3:5972030-5972216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 380-800 | 
| Cow position: | chr3:945248-944810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 197 | 
| Conread position: | 380-800 | 
| Cow position: | chr3:5951072-5951497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 84 | 
| Conread position: | 380-800 | 
| Cow position: | chr3:40003956-40004365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 200 | 
| Conread position: | 381-793 | 
| Cow position: | chr3:48095557-48095968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 112, 19 | 
| Conread position: | 384-800 | 
| Cow position: | chr3:74403474-74403044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 106, 41 | 
| Conread position: | 390-570 | 
| Cow position: | chr3:1074123-1073945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 114, 0 | 
| Conread position: | 390-800 | 
| Cow position: | chr3:73416542-73416116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 28 | 
| Conread position: | 392-778 | 
| Cow position: | chr3:14724647-14724260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 24 | 
| Conread position: | 394-799 | 
| Cow position: | chr3:6865189-6864780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 127 | 
| Conread position: | 394-800 | 
| Cow position: | chr3:36671078-36671501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 195 | 
| Conread position: | 395-794 | 
| Cow position: | chr3:37451627-37451225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 48 | 
| Conread position: | 397-708 | 
| Cow position: | chr3:19824533-19824847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 120, 21 | 
| Conread position: | 404-708 | 
| Cow position: | chr3:35030245-35030558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 19, 67 | 
| Conread position: | 404-800 | 
| Cow position: | chr3:35620091-35619676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 61 | 
| Conread position: | 405-630 | 
| Cow position: | chr3:28634284-28634513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 118, 191 | 
| Conread position: | 408-783 | 
| Cow position: | chr3:17460741-17460360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 15, 9 | 
| Conread position: | 409-800 | 
| Cow position: | chr3:49999660-49999255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 8 | 
| Conread position: | 413-800 | 
| Cow position: | chr3:597619-597227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 110 | 
| Conread position: | 417-798 | 
| Cow position: | chr3:77226234-77225854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 101 | 
| Conread position: | 418-800 | 
| Cow position: | chr3:13723196-13723593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 174 | 
| Conread position: | 418-800 | 
| Cow position: | chr3:46014174-46014563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 168 | 
| Conread position: | 418-800 | 
| Cow position: | chr3:63138755-63139147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 5, 188 | 
| Conread position: | 419-800 | 
| Cow position: | chr3:18886972-18886578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 160 | 
| Conread position: | 421-792 | 
| Cow position: | chr3:7856934-7856549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 158 | 
| Conread position: | 421-793 | 
| Cow position: | chr3:20999559-20999946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 169 | 
| Conread position: | 421-798 | 
| Cow position: | chr3:29130602-29130215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 104, 69 | 
| Conread position: | 421-800 | 
| Cow position: | chr3:3652794-3653168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 34 | 
| Conread position: | 421-800 | 
| Cow position: | chr3:7476409-7476801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 33 | 
| Conread position: | 421-800 | 
| Cow position: | chr3:40826909-40826517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 158 | 
| Conread position: | 421-800 | 
| Cow position: | chr3:57743022-57742632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 56 | 
| Conread position: | 421-800 | 
| Cow position: | chr3:81101591-81101197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 158 | 
| Conread position: | 422-798 | 
| Cow position: | chr3:12254550-12254165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 90 | 
| Conread position: | 422-800 | 
| Cow position: | chr3:24572657-24573048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 165 | 
| Conread position: | 424-631 | 
| Cow position: | chr3:34027254-34027464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 105, 154 | 
| Conread position: | 424-671 | 
| Cow position: | chr3:11334354-11334605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 94, 156 | 
| Conread position: | 424-775 | 
| Cow position: | chr3:46006598-46006246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 77 | 
| Conread position: | 424-791 | 
| Cow position: | chr3:15988446-15988067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 27 | 
| Conread position: | 425-800 | 
| Cow position: | chr3:33326891-33326500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 147 | 
| Conread position: | 430-698 | 
| Cow position: | chr3:60891767-60891491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 96, 148 | 
| Conread position: | 430-798 | 
| Cow position: | chr3:56103240-56102861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 47 | 
| Conread position: | 430-800 | 
| Cow position: | chr3:63736887-63736507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 78 | 
| Conread position: | 437-800 | 
| Cow position: | chr3:46225378-46225013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 149 | 
| Conread position: | 447-794 | 
| Cow position: | chr3:42500548-42500195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 131 | 
| Conread position: | 455-710 | 
| Cow position: | chr3:18253021-18252765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 70, 119 | 
| Conread position: | 457-567 | 
| Cow position: | chr3:66650426-66650534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 460-709 | 
| Cow position: | chr3:71246076-71245813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 52, 9 | 
| Conread position: | 460-800 | 
| Cow position: | chr3:11384783-11384437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 24, 9 | 
| Conread position: | 462-800 | 
| Cow position: | chr3:12665609-12665256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 61, 134 | 
| Conread position: | 462-800 | 
| Cow position: | chr3:61173962-61173614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 64, 25 | 
| Conread position: | 463-800 | 
| Cow position: | chr3:54086915-54087247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 91 | 
| Conread position: | 467-800 | 
| Cow position: | chr3:39328005-39327667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 105 | 
| Conread position: | 469-655 | 
| Cow position: | chr3:523669-523481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 57, 105 | 
| Conread position: | 469-800 | 
| Cow position: | chr3:19794632-19794973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 105 | 
| Conread position: | 469-800 | 
| Cow position: | chr3:46857819-46858165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 56, 123 | 
| Conread position: | 469-800 | 
| Cow position: | chr3:64876237-64875892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 52, 127 | 
| Conread position: | 470-794 | 
| Cow position: | chr3:64281861-64282191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 105 | 
| Conread position: | 471-800 | 
| Cow position: | chr3:49931298-49930954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 54, 125 | 
| Conread position: | 474-711 | 
| Cow position: | chr3:68043045-68043288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 37, 106 | 
| Conread position: | 474-800 | 
| Cow position: | chr3:73637339-73636999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 52, 124 | 
| Conread position: | 483-800 | 
| Cow position: | chr3:601147-600832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 53, 23 | 
| Conread position: | 492-800 | 
| Cow position: | chr3:35343085-35342769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 80, 97 | 
| Conread position: | 507-800 | 
| Cow position: | chr3:56718909-56719207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 24, 67 | 
| Conread position: | 510-800 | 
| Cow position: | chr3:33318539-33318251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 25, 63 | 
| Conread position: | 514-788 | 
| Cow position: | chr3:49429355-49429623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 60 | 
| Conread position: | 520-800 | 
| Cow position: | chr3:63148232-63148520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 16, 54 | 
| Conread position: | 521-800 | 
| Cow position: | chr3:8391760-8391484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 198, 13 | 
| Conread position: | 522-788 | 
| Cow position: | chr3:70215576-70215302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 50, 67 | 
| Conread position: | 522-800 | 
| Cow position: | chr3:53788253-53787967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 50, 67 | 
| Conread position: | 522-800 | 
| Cow position: | chr3:55895356-55895074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 124, 50 | 
| Conread position: | 523-705 | 
| Cow position: | chr3:41315504-41315324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 119, 49 | 
| Conread position: | 523-798 | 
| Cow position: | chr3:75164674-75164947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 119, 61 | 
| Conread position: | 523-799 | 
| Cow position: | chr3:34464768-34464487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 65 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:26532602-26532885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 82, 49 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:27454531-27454814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 51 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:37486645-37486923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 11, 50 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:49732394-49732677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 120, 36 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:70322271-70322554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 92, 49 | 
| Conread position: | 523-800 | 
| Cow position: | chr3:82364180-82363904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 11, 49 | 
| Conread position: | 524-705 | 
| Cow position: | chr3:11411646-11411826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 109, 50 | 
| Conread position: | 525-721 | 
| Cow position: | chr3:28640335-28640138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 10, 48 | 
| Conread position: | 525-796 | 
| Cow position: | chr3:29582511-29582231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 9, 48 | 
| Conread position: | 526-754 | 
| Cow position: | chr3:80818218-80817981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 111, 38 | 
| Conread position: | 526-800 | 
| Cow position: | chr3:68274241-68273959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 526-800 | 
| Cow position: | chr3:74849741-74850028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 36, 65 | 
| Conread position: | 532-800 | 
| Cow position: | chr3:29573733-29574007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 40, 57 | 
| Conread position: | 533-720 | 
| Cow position: | chr3:13291498-13291311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 109, 39 | 
| Conread position: | 533-800 | 
| Cow position: | chr3:7772641-7772894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 182, 39 | 
| Conread position: | 533-800 | 
| Cow position: | chr3:42977199-42977471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 39, 56 | 
| Conread position: | 533-800 | 
| Cow position: | chr3:80872325-80872051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 111, 41 | 
| Conread position: | 534-794 | 
| Cow position: | chr3:45312171-45311916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 99, 51 | 
| Conread position: | 535-800 | 
| Cow position: | chr3:33269615-33269350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 104, 37 | 
| Conread position: | 536-781 | 
| Cow position: | chr3:2798068-2798308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 97, 48 | 
| Conread position: | 536-800 | 
| Cow position: | chr3:32490322-32490594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 36, 53 | 
| Conread position: | 545-796 | 
| Cow position: | chr3:48240633-48240374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 50, 27 | 
| Conread position: | 545-800 | 
| Cow position: | chr3:34115982-34116253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 68, 29 | 
| Conread position: | 546-800 | 
| Cow position: | chr3:1739492-1739754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 26, 43 | 
| Conread position: | 548-800 | 
| Cow position: | chr3:2791126-2790870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 91, 26 | 
| Conread position: | 549-800 | 
| Cow position: | chr3:30623252-30622993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 23, 40 | 
| Conread position: | 552-800 | 
| Cow position: | chr3:13117687-13117934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 90, 20 | 
| Conread position: | 557-800 | 
| Cow position: | chr3:19947569-19947327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 76, 18 | 
| Conread position: | 570-796 | 
| Cow position: | chr3:66736213-66736450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 145, 51 | 
| Conread position: | 582-800 | 
| Cow position: | chr3:10412593-10412365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 61, 15 | 
| Conread position: | 583-770 | 
| Cow position: | chr3:82891373-82891180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 588-800 | 
| Cow position: | chr3:54291595-54291379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 39, 56 | 
| Conread position: | 591-800 | 
| Cow position: | chr3:2432316-2432534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 122, 0 | 
| Conread position: | 591-800 | 
| Cow position: | chr3:49134198-49134418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 591-800 | 
| Cow position: | chr3:68510000-68510217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 601-788 | 
| Cow position: | chr3:63238707-63238899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 41, 103 | 
| Conread position: | 602-800 | 
| Cow position: | chr3:4191609-4191818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 602-800 | 
| Cow position: | chr3:6854299-6854508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 602-800 | 
| Cow position: | chr3:31120809-31121018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 614-800 | 
| Cow position: | chr3:39856779-39856582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 623-799 | 
| Cow position: | chr3:40285014-40285196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 90, 68 | 
| Conread position: | 626-800 | 
| Cow position: | chr3:7481205-7481383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 627-800 | 
| Cow position: | chr3:57555071-57554893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 38, 66 | 
| Conread position: | 643-800 | 
| Cow position: | chr3:37280680-37280514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 650-800 | 
| Cow position: | chr3:36571415-36571259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 63, 0 | 
Show alignments to all cow chromosomes.
