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Cow genome map

           
Conread name:
           
Liv1-LVRM10001H11
        

               
Conread position:
               
2-183
               

               
Cow position:
               
chr11:33409177-33409355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr11:62789215-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr11:69978055-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr11:55494764-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 131
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr11:3175758-3175531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr11:71390481-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr11:9270642-9270907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr11:66188233-66188576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr11:77128745-77128411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
132, 180
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr11:8147814-8148152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 145
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr11:30355143-30354795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 164
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr11:83230316-83230659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chr11:12111374-12111743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr11:56654640-56654266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
130, 253
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr11:43646327-43646703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 107
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr11:18698964-18698587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr11:56518227-56518602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr11:43898223-43897845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 87
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr11:82740593-82740408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr11:18851991-18851766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
172, 42
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr11:14649230-14649604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
4-378
               

               
Cow position:
               
chr11:48672794-48672419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
5-149
               

               
Cow position:
               
chr11:36328953-36329094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chr11:17721720-17721886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
5-174
               

               
Cow position:
               
chr11:35803218-35803046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr11:42159975-42160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr11:40608513-40608722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr11:47772308-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 190
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr11:65767281-65767056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr11:23407546-23407313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr11:69075992-69075756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:5201570-5201805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 95
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:63435602-63435362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:28993657-28993889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:51729368-51729131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr11:2575822-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
139, 120
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr11:45435162-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 141
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr11:48296112-48295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 59
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr11:80556301-80556055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
145, 65
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chr11:16906969-16907214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr11:71501050-71501312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
164, 247
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr11:30955082-30954815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 125
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr11:42296538-42296803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 127
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr11:28168341-28168616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 167
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr11:11558253-11557952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 262
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr11:17661165-17660872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr11:23586720-23586413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 163
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chr11:29960377-29960079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 59
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr11:19500710-19501004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr11:32436415-32436098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr11:62620458-62620150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr11:30638868-30639192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
212, 118
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr11:47899350-47899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 127
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr11:62239826-62239504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 98
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr11:4662965-4663289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 142
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chr11:42043915-42044238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr11:20238758-20238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 250
               

               
Conread position:
               
5-341
               

               
Cow position:
               
chr11:35153742-35154080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 98
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chr11:16342147-16342495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 227
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr11:2907447-2907781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 33
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr11:22499285-22499614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
142, 57
               

               
Conread position:
               
5-353
               

               
Cow position:
               
chr11:34121280-34120929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr11:11232374-11232725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 65
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr11:377560-377922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr11:50778449-50778098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 98
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr11:52380790-52381142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 244
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr11:17227563-17227912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 65
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr11:35873921-35874253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 162
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr11:80564374-80564032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
144, 7
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr11:62663153-62663507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
170, 58
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr11:259090-259454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 171
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr11:17036446-17036827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 355
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr11:17278594-17278937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
213, 56
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr11:30192260-30191893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr11:33341063-33341422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 127
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr11:45646512-45646867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr11:55052953-55052593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
241, 110
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr11:83043281-83043640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 132
               

               
Conread position:
               
5-371
               

               
Cow position:
               
chr11:1625143-1625497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr11:7590270-7589905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 58
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr11:23128458-23128821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 244
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:11125745-11125376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 270
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:20761924-20761559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:49934649-49935030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 280
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:52297139-52297510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 98
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:62226068-62225713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
96, 174
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:68206760-68207122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr11:83066569-83066209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr11:48496511-48496854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr11:69119375-69119011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 165
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:1071009-1071383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 217
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:18572882-18572514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
86, 79
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:25387150-25386781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 281
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:27248572-27248203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:28644169-28643792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 256
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:43360702-43361090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:44032093-44031710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:48272282-48271906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 129
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:53553297-53552967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:64044315-64043959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 122
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr11:80819923-80820288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 56
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr11:10213487-10213849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr11:80923242-80923626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 59
               

               
Conread position:
               
5-382
               

               
Cow position:
               
chr11:44636672-44637054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 129
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr11:11469567-11469868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr11:39499437-39499087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 172
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr11:62150813-62151171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr11:81135088-81135327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 108
               

               
Conread position:
               
7-266
               

               
Cow position:
               
chr11:5543-5286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
142, 119
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr11:26845514-26845762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 162
               

               
Conread position:
               
7-275
               

               
Cow position:
               
chr11:34646669-34646402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
141, 170
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr11:2917507-2917837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
7-353
               

               
Cow position:
               
chr11:27747003-27746653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 125
               

               
Conread position:
               
7-371
               

               
Cow position:
               
chr11:63469955-63469599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 172
               

               
Conread position:
               
7-375
               

               
Cow position:
               
chr11:35580340-35579967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
7-378
               

               
Cow position:
               
chr11:35684421-35684788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 125
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr11:50152734-50153108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 335
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr11:17083231-17083573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 151
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr11:75874677-75874921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
166, 120
               

               
Conread position:
               
11-166
               

               
Cow position:
               
chr11:69392637-69392482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 7
               

               
Conread position:
               
11-298
               

               
Cow position:
               
chr11:5486091-5485798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
11-378
               

               
Cow position:
               
chr11:59902968-59902601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr11:81611842-81611588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
17-284
               

               
Cow position:
               
chr11:5075158-5075418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
132, 113
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr11:23385173-23385480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr11:18588516-18588867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 113
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr11:439593-439948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
88, 131
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr11:3720323-3719962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr11:13191304-13190930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr11:81300551-81300900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 103
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr11:33349631-33349992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 112
               

               
Conread position:
               
18-261
               

               
Cow position:
               
chr11:30830545-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
18-306
               

               
Cow position:
               
chr11:65762522-65762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 250
               

               
Conread position:
               
18-349
               

               
Cow position:
               
chr11:81162364-81162691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr11:2092403-2092058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr11:36182763-36182399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 236
               

               
Conread position:
               
18-381
               

               
Cow position:
               
chr11:13061167-13061514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 112
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr11:79960717-79960985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 165
               

               
Conread position:
               
19-378
               

               
Cow position:
               
chr11:4732410-4732049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 217
               

               
Conread position:
               
20-375
               

               
Cow position:
               
chr11:80787840-80788197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 110
               

               
Conread position:
               
21-270
               

               
Cow position:
               
chr11:82796223-82796470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
23-167
               

               
Cow position:
               
chr11:54218778-54218636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
23-248
               

               
Cow position:
               
chr11:17493547-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
23-298
               

               
Cow position:
               
chr11:61958680-61958959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
23-353
               

               
Cow position:
               
chr11:47545195-47544863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chr11:45897986-45898325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
23-366
               

               
Cow position:
               
chr11:8428575-8428217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
23-370
               

               
Cow position:
               
chr11:73353996-73354337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
142, 103
               

               
Conread position:
               
23-372
               

               
Cow position:
               
chr11:48474767-48474425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr11:1362404-1362767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr11:40478789-40479157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr11:67600848-67600482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
23-375
               

               
Cow position:
               
chr11:13500079-13499728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
23-375
               

               
Cow position:
               
chr11:65826687-65827016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
152, 106
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr11:36987013-36986672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 91
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr11:38639175-38638833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr11:73512379-73512709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
194, 92
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr11:44234419-44234067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 185
               

               
Conread position:
               
24-298
               

               
Cow position:
               
chr11:65607626-65607903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
24-334
               

               
Cow position:
               
chr11:50073000-50072716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
24-342
               

               
Cow position:
               
chr11:36112482-36112166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
106, 40
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr11:33348124-33348443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
151, 91
               

               
Conread position:
               
24-354
               

               
Cow position:
               
chr11:16261962-16262297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 193
               

               
Conread position:
               
24-359
               

               
Cow position:
               
chr11:34829723-34830050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
24-370
               

               
Cow position:
               
chr11:34113328-34112992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
24-371
               

               
Cow position:
               
chr11:55761931-55761597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 111
               

               
Conread position:
               
24-372
               

               
Cow position:
               
chr11:6233817-6234162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 185
               

               
Conread position:
               
24-375
               

               
Cow position:
               
chr11:42359177-42358842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 115
               

               
Conread position:
               
24-378
               

               
Cow position:
               
chr11:3833301-3833637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
25-277
               

               
Cow position:
               
chr11:23271941-23272193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 63
               

               
Conread position:
               
25-280
               

               
Cow position:
               
chr11:13592798-13592542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
25-290
               

               
Cow position:
               
chr11:19591932-19592199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
25-295
               

               
Cow position:
               
chr11:49231936-49231667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
25-299
               

               
Cow position:
               
chr11:63433996-63434269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
156, 121
               

               
Conread position:
               
25-332
               

               
Cow position:
               
chr11:2084206-2083904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 114
               

               
Conread position:
               
25-372
               

               
Cow position:
               
chr11:54334390-54334051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 108
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr11:33414299-33413944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr11:70483789-70484151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 158
               

               
Conread position:
               
25-379
               

               
Cow position:
               
chr11:46747798-46748159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
26-225
               

               
Cow position:
               
chr11:67615186-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
26-317
               

               
Cow position:
               
chr11:67550317-67550592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
26-340
               

               
Cow position:
               
chr11:77319475-77319172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
107, 122
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr11:3234136-3233821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
191, 103
               

               
Conread position:
               
26-351
               

               
Cow position:
               
chr11:70836315-70836630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 102
               

               
Conread position:
               
26-359
               

               
Cow position:
               
chr11:24937726-24937392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 194
               

               
Conread position:
               
26-361
               

               
Cow position:
               
chr11:83323624-83323304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
149, 99
               

               
Conread position:
               
26-377
               

               
Cow position:
               
chr11:4207372-4207010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
256, 236
               

               
Conread position:
               
26-378
               

               
Cow position:
               
chr11:67747345-67746988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
28-381
               

               
Cow position:
               
chr11:39115552-39115203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
29-248
               

               
Cow position:
               
chr11:11647130-11646907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
104, 28
               

               
Conread position:
               
29-293
               

               
Cow position:
               
chr11:27913342-27913070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 144
               

               
Conread position:
               
29-317
               

               
Cow position:
               
chr11:38874344-38874630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
29-346
               

               
Cow position:
               
chr11:45872253-45872576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
29-351
               

               
Cow position:
               
chr11:30764548-30764217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
29-358
               

               
Cow position:
               
chr11:29916599-29916269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
91, 180
               

               
Conread position:
               
29-360
               

               
Cow position:
               
chr11:66041336-66041002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 226
               

               
Conread position:
               
29-372
               

               
Cow position:
               
chr11:38236309-38235960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
136, 228
               

               
Conread position:
               
29-374
               

               
Cow position:
               
chr11:3780360-3780710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 178
               

               
Conread position:
               
29-374
               

               
Cow position:
               
chr11:77745194-77745539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
107, 215
               

               
Conread position:
               
29-375
               

               
Cow position:
               
chr11:2788451-2788093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 258
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr11:10095401-10095053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 114
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr11:30721156-30720808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
91, 138
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr11:80761320-80761669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
30-293
               

               
Cow position:
               
chr11:70600772-70601027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
30-296
               

               
Cow position:
               
chr11:7458225-7458493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
30-378
               

               
Cow position:
               
chr11:15285558-15285907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 102
               

               
Conread position:
               
31-288
               

               
Cow position:
               
chr11:41215788-41215544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
31-332
               

               
Cow position:
               
chr11:30925212-30924909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 155
               

               
Conread position:
               
31-375
               

               
Cow position:
               
chr11:44575689-44576023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 103
               

               
Conread position:
               
31-375
               

               
Cow position:
               
chr11:74316765-74316420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 72
               

               
Conread position:
               
31-376
               

               
Cow position:
               
chr11:4323414-4323079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 194
               

               
Conread position:
               
31-376
               

               
Cow position:
               
chr11:21497578-21497253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
109, 98
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr11:1849115-1849453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr11:73924506-73924848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
32-358
               

               
Cow position:
               
chr11:35881965-35881642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
33-351
               

               
Cow position:
               
chr11:14094366-14094685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 191
               

               
Conread position:
               
33-374
               

               
Cow position:
               
chr11:67804803-67804465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 120
               

               
Conread position:
               
35-266
               

               
Cow position:
               
chr11:26144044-26144279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 111
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr11:37804502-37804743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
112, 148
               

               
Conread position:
               
35-331
               

               
Cow position:
               
chr11:57724773-57725071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
140, 108
               

               
Conread position:
               
35-341
               

               
Cow position:
               
chr11:81282009-81281692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr11:56729001-56728688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 167
               

               
Conread position:
               
35-368
               

               
Cow position:
               
chr11:21549532-21549216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
35-371
               

               
Cow position:
               
chr11:4436371-4436050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
140, 89
               

               
Conread position:
               
35-378
               

               
Cow position:
               
chr11:287284-287623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
35-378
               

               
Cow position:
               
chr11:55744519-55744184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
182, 103
               

               
Conread position:
               
35-379
               

               
Cow position:
               
chr11:33293727-33294082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 92
               

               
Conread position:
               
36-361
               

               
Cow position:
               
chr11:30911953-30912264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
36-373
               

               
Cow position:
               
chr11:76369472-76369806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
258, 143
               

               
Conread position:
               
36-376
               

               
Cow position:
               
chr11:24602015-24601679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 96
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr11:7874189-7873872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
186, 92
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr11:59702536-59702195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 9
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr11:76114697-76114363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 97
               

               
Conread position:
               
37-349
               

               
Cow position:
               
chr11:75177944-75177628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
128, 169
               

               
Conread position:
               
37-350
               

               
Cow position:
               
chr11:30597043-30596735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
105, 221
               

               
Conread position:
               
37-378
               

               
Cow position:
               
chr11:61427644-61427325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
38-258
               

               
Cow position:
               
chr11:41175900-41176122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
38-292
               

               
Cow position:
               
chr11:68913189-68912939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
38-299
               

               
Cow position:
               
chr11:72375634-72375899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
38-364
               

               
Cow position:
               
chr11:4674397-4674726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr11:18243893-18244225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
38-374
               

               
Cow position:
               
chr11:10620279-10620611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
38-374
               

               
Cow position:
               
chr11:46580406-46580081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
103, 210
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr11:66733878-66733546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 94
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr11:71868554-71868893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
110, 91
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr11:85723746-85723412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 94
               

               
Conread position:
               
39-364
               

               
Cow position:
               
chr11:13043098-13043412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 76
               

               
Conread position:
               
40-359
               

               
Cow position:
               
chr11:53773728-53773402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
40-374
               

               
Cow position:
               
chr11:21844090-21844418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
41-305
               

               
Cow position:
               
chr11:79986161-79985897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
105, 201
               

               
Conread position:
               
42-374
               

               
Cow position:
               
chr11:55333954-55333622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
44-364
               

               
Cow position:
               
chr11:15632511-15632831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 294
               

               
Conread position:
               
49-375
               

               
Cow position:
               
chr11:7924551-7924875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
51-310
               

               
Cow position:
               
chr11:2925260-2925512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
52-317
               

               
Cow position:
               
chr11:18591399-18591662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 81
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr11:8339371-8339694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
95, 131
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr11:65431089-65430774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
54-361
               

               
Cow position:
               
chr11:18210315-18210621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
55-365
               

               
Cow position:
               
chr11:6154440-6154136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr11:42792944-42793246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
66-353
               

               
Cow position:
               
chr11:24585202-24584915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 184
               

               
Conread position:
               
72-232
               

               
Cow position:
               
chr11:33824873-33825037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
72-288
               

               
Cow position:
               
chr11:8936477-8936687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
72-374
               

               
Cow position:
               
chr11:38194172-38193866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
72-375
               

               
Cow position:
               
chr11:16251229-16251536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 189
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr11:955382-955075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 95
               

               
Conread position:
               
75-370
               

               
Cow position:
               
chr11:4412010-4412301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 61
               

               
Conread position:
               
84-365
               

               
Cow position:
               
chr11:67950969-67951237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
86-248
               

               
Cow position:
               
chr11:56187620-56187457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
87-364
               

               
Cow position:
               
chr11:59155877-59156146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
88-241
               

               
Cow position:
               
chr11:70740978-70741131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
91-348
               

               
Cow position:
               
chr11:63516823-63516563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
91-370
               

               
Cow position:
               
chr11:41577024-41577286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
91-376
               

               
Cow position:
               
chr11:47165145-47165424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
93-368
               

               
Cow position:
               
chr11:82232413-82232142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
70, 184
               

               
Conread position:
               
105-378
               

               
Cow position:
               
chr11:62749774-62750039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
109-289
               

               
Cow position:
               
chr11:47851004-47850826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
118-341
               

               
Cow position:
               
chr11:63520739-63520520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
124-375
               

               
Cow position:
               
chr11:25165407-25165159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 159
               

               
Conread position:
               
127-364
               

               
Cow position:
               
chr11:27462435-27462660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
138-374
               

               
Cow position:
               
chr11:1668625-1668389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
144-364
               

               
Cow position:
               
chr11:75355551-75355334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr11:84890814-84891035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 189
               

               
Conread position:
               
184-354
               

               
Cow position:
               
chr11:15608389-15608558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
185-333
               

               
Cow position:
               
chr11:26277190-26277335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
188-298
               

               
Cow position:
               
chr11:83033800-83033910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-344
               

               
Cow position:
               
chr11:44575597-44575443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
59, 53
               
Show alignments to all cow chromosomes.