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Cow genome map

           
Conread name:
           
Liv1-LVRM10001H11
        

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:34654240-34653882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 93
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr21:8206936-8206670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr21:29978594-29978907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
173, 197
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr21:21169330-21169667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr21:27229629-27229996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
2-374
               

               
Cow position:
               
chr21:45355999-45355633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
126, 144
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr21:29485144-29484780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr21:19258984-19258621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:23672911-23672539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 74
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr21:48234000-48234299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr21:33997067-33997422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
145, 9
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr21:44565557-44565903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
330, 61
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr21:45473593-45473973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
172, 130
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr21:19059930-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr21:10007476-10007802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
133, 13
               

               
Conread position:
               
5-131
               

               
Cow position:
               
chr21:39393912-39393785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chr21:30980415-30980577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
137, 59
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr21:47719139-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
163, 35
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr21:44214289-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
128, 59
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr21:45262647-45262910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
143, 162
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr21:30222508-30222218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 186
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chr21:27810550-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
176, 59
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr21:20260157-20260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr21:12723314-12723020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chr21:41590402-41590716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
139, 164
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr21:7581742-7582092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 121
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr21:30592146-30592485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr21:47763955-47764301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr21:13365505-13365151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 76
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr21:32559202-32559544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr21:26245077-26244741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
170, 139
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr21:31691645-31691283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr21:42135453-42135818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr21:5392372-5392743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 129
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr21:12801584-12801947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 126
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr21:27569010-27569362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 56
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr21:38121264-38120903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr21:30990124-30990473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 56
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr21:24858478-24858105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 170
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr21:44825723-44826082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 174
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr21:46264333-46263970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 91
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:643487-643130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 112
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:6713360-6713745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 60
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:11739957-11740339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:20160839-20160477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 138
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:23321915-23322288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 127
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:25764798-25764428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:28626400-28626034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:29213997-29214363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 149
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:30250041-30250415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 59
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:32297356-32297709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:33210351-33209991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:33350904-33350535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr21:29069163-29069536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 263
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr21:37299625-37299257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 167
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr21:33264007-33263639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 127
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr21:41974215-41974589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
6-192
               

               
Cow position:
               
chr21:20183233-20183044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
6-377
               

               
Cow position:
               
chr21:33982648-33983016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr21:641749-641377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 237
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr21:20418521-20418806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
140, 131
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr21:9990671-9990329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 110
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr21:9028775-9028459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
13-354
               

               
Cow position:
               
chr21:30606931-30607271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
14-378
               

               
Cow position:
               
chr21:42540068-42540427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 157
               

               
Conread position:
               
17-264
               

               
Cow position:
               
chr21:17009132-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr21:37789848-37790110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
17-301
               

               
Cow position:
               
chr21:27669164-27668881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
17-311
               

               
Cow position:
               
chr21:17638043-17637758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
158, 111
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr21:1483630-1483282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 10
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr21:7564156-7564529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 242
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr21:46912696-46912337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr21:13048042-13048404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 194
               

               
Conread position:
               
17-381
               

               
Cow position:
               
chr21:16187656-16188008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 116
               

               
Conread position:
               
18-365
               

               
Cow position:
               
chr21:31253683-31253341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
157, 42
               

               
Conread position:
               
18-368
               

               
Cow position:
               
chr21:46242091-46242436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
18-375
               

               
Cow position:
               
chr21:22861151-22860798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr21:82217-81863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 101
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr21:31662617-31662253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 155
               

               
Conread position:
               
20-379
               

               
Cow position:
               
chr21:40899487-40899128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
23-229
               

               
Cow position:
               
chr21:8426591-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 100
               

               
Conread position:
               
23-243
               

               
Cow position:
               
chr21:36910076-36909858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
23-265
               

               
Cow position:
               
chr21:10561438-10561682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
115, 103
               

               
Conread position:
               
23-327
               

               
Cow position:
               
chr21:45920913-45921215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
126, 106
               

               
Conread position:
               
23-346
               

               
Cow position:
               
chr21:32339595-32339912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
152, 122
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chr21:18844867-18845202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
23-359
               

               
Cow position:
               
chr21:47464974-47465309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
23-361
               

               
Cow position:
               
chr21:33791236-33791558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
158, 53
               

               
Conread position:
               
23-365
               

               
Cow position:
               
chr21:42841452-42841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 178
               

               
Conread position:
               
23-371
               

               
Cow position:
               
chr21:36795748-36795402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
125, 234
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr21:45330462-45330811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
23-375
               

               
Cow position:
               
chr21:6051648-6051302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 116
               

               
Conread position:
               
23-375
               

               
Cow position:
               
chr21:23587027-23586674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 141
               

               
Conread position:
               
23-376
               

               
Cow position:
               
chr21:23800983-23801324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 86
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr21:396012-395671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr21:5898257-5898605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr21:34390830-34391177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 125
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr21:7673265-7672925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr21:41878614-41878268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
23-381
               

               
Cow position:
               
chr21:9940043-9940393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 247
               

               
Conread position:
               
24-256
               

               
Cow position:
               
chr21:22210102-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
143, 122
               

               
Conread position:
               
24-259
               

               
Cow position:
               
chr21:30835507-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 63
               

               
Conread position:
               
24-361
               

               
Cow position:
               
chr21:5427084-5426756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
24-375
               

               
Cow position:
               
chr21:3818353-3818012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 129
               

               
Conread position:
               
24-378
               

               
Cow position:
               
chr21:3585224-3585563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
25-242
               

               
Cow position:
               
chr21:4280530-4280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
25-243
               

               
Cow position:
               
chr21:16570044-16569825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 113
               

               
Conread position:
               
25-286
               

               
Cow position:
               
chr21:25628766-25629027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 213
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr21:12301368-12301631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 113
               

               
Conread position:
               
25-305
               

               
Cow position:
               
chr21:19369203-19369481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
25-314
               

               
Cow position:
               
chr21:42007319-42007603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
25-360
               

               
Cow position:
               
chr21:14452378-14452041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
25-364
               

               
Cow position:
               
chr21:3763599-3763930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
25-371
               

               
Cow position:
               
chr21:10264177-10263843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 226
               

               
Conread position:
               
25-375
               

               
Cow position:
               
chr21:33863-33517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
25-375
               

               
Cow position:
               
chr21:4399946-4399597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
25-375
               

               
Cow position:
               
chr21:41621269-41620915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr21:4998351-4998692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr21:23535853-23535506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
25-381
               

               
Cow position:
               
chr21:24296623-24296973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 104
               

               
Conread position:
               
26-328
               

               
Cow position:
               
chr21:18800392-18800686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
58, 125
               

               
Conread position:
               
26-374
               

               
Cow position:
               
chr21:29002011-29002365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
26-378
               

               
Cow position:
               
chr21:36297635-36297272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 325
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr21:22465330-22465095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr21:27624837-27624548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
146, 91
               

               
Conread position:
               
29-339
               

               
Cow position:
               
chr21:10001214-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
99, 119
               

               
Conread position:
               
29-353
               

               
Cow position:
               
chr21:15911539-15911218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 35
               

               
Conread position:
               
29-368
               

               
Cow position:
               
chr21:11644827-11645166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 216
               

               
Conread position:
               
29-371
               

               
Cow position:
               
chr21:44251704-44252026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
29-372
               

               
Cow position:
               
chr21:44515403-44515073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr21:5153760-5153410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 238
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr21:30231555-30231910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 110
               

               
Conread position:
               
29-379
               

               
Cow position:
               
chr21:938158-937841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
29-381
               

               
Cow position:
               
chr21:724746-725102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 43
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr21:17184056-17183709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr21:23822292-23821961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr21:39401727-39401393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
33-349
               

               
Cow position:
               
chr21:27145857-27146172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
34-290
               

               
Cow position:
               
chr21:42097209-42096945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
34-354
               

               
Cow position:
               
chr21:46144093-46143760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 95
               

               
Conread position:
               
35-290
               

               
Cow position:
               
chr21:7785350-7785106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
35-329
               

               
Cow position:
               
chr21:13840459-13840164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
35-353
               

               
Cow position:
               
chr21:13488660-13488337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
35-374
               

               
Cow position:
               
chr21:25344994-25344675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
188, 85
               

               
Conread position:
               
36-221
               

               
Cow position:
               
chr21:22014322-22014133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr21:20153088-20152810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
94, 114
               

               
Conread position:
               
36-309
               

               
Cow position:
               
chr21:11360167-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
36-312
               

               
Cow position:
               
chr21:957804-957526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
36-314
               

               
Cow position:
               
chr21:35354663-35354394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
36-360
               

               
Cow position:
               
chr21:17428628-17428314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
36-360
               

               
Cow position:
               
chr21:22353105-22353419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
36-376
               

               
Cow position:
               
chr21:28442864-28442541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
37-348
               

               
Cow position:
               
chr21:19363328-19363641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 213
               

               
Conread position:
               
38-261
               

               
Cow position:
               
chr21:17559793-17560023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
38-280
               

               
Cow position:
               
chr21:12916291-12916539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
38-307
               

               
Cow position:
               
chr21:17875063-17875332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
97, 108
               

               
Conread position:
               
38-309
               

               
Cow position:
               
chr21:12461837-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 109
               

               
Conread position:
               
38-361
               

               
Cow position:
               
chr21:10601245-10601558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 95
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr21:41597941-41597613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
137, 89
               

               
Conread position:
               
38-375
               

               
Cow position:
               
chr21:40134287-40133951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 92
               

               
Conread position:
               
38-376
               

               
Cow position:
               
chr21:6834179-6833847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
133, 92
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr21:18289793-18289454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 137
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr21:19196034-19196375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr21:19766984-19766647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
38-379
               

               
Cow position:
               
chr21:15584289-15584611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
92, 111
               

               
Conread position:
               
39-260
               

               
Cow position:
               
chr21:45906493-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
40-349
               

               
Cow position:
               
chr21:15976761-15976464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 98
               

               
Conread position:
               
41-359
               

               
Cow position:
               
chr21:47729894-47730207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 141
               

               
Conread position:
               
42-306
               

               
Cow position:
               
chr21:17856670-17856408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 162
               

               
Conread position:
               
43-378
               

               
Cow position:
               
chr21:5636595-5636928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
44-376
               

               
Cow position:
               
chr21:2367456-2367135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr21:426923-426585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
95, 116
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr21:20262219-20262541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr21:37480070-37479749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 6
               

               
Conread position:
               
56-378
               

               
Cow position:
               
chr21:2679669-2679345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 74
               

               
Conread position:
               
67-378
               

               
Cow position:
               
chr21:23192412-23192725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
72-266
               

               
Cow position:
               
chr21:2904382-2904572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 49
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr21:44733077-44733308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
236, 102
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr21:5344762-5344454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
47, 174
               

               
Conread position:
               
73-275
               

               
Cow position:
               
chr21:18041752-18041956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
74-378
               

               
Cow position:
               
chr21:39888655-39888951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
81-357
               

               
Cow position:
               
chr21:28443285-28443565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
84-307
               

               
Cow position:
               
chr21:14515925-14515709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
89-375
               

               
Cow position:
               
chr21:12960819-12961103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
121-352
               

               
Cow position:
               
chr21:42024169-42023943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr21:18495013-18494776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
122-379
               

               
Cow position:
               
chr21:36793936-36793674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
133-373
               

               
Cow position:
               
chr21:5597187-5596943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
157-378
               

               
Cow position:
               
chr21:23683559-23683343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
173-379
               

               
Cow position:
               
chr21:19958220-19958018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
178-377
               

               
Cow position:
               
chr21:13751376-13751180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
178-377
               

               
Cow position:
               
chr21:17714306-17714107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 20
               

               
Conread position:
               
179-364
               

               
Cow position:
               
chr21:21223281-21223097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
180-378
               

               
Cow position:
               
chr21:18935748-18935554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
150, 0
               
Show alignments to all cow chromosomes.