Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 6-155 |
| Cow position: | chr11:4664623-4664771 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 8-305 |
| Cow position: | chr11:33280355-33280055 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 79 |
| Conread position: | 13-155 |
| Cow position: | chr11:86707934-86708077 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 14-161 |
| Cow position: | chr11:279783-279935 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 14-306 |
| Cow position: | chr11:59372328-59372631 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 15-178 |
| Cow position: | chr11:42058443-42058273 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 15-179 |
| Cow position: | chr11:39241788-39241616 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 15-441 |
| Cow position: | chr11:64841912-64841497 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 16-362 |
| Cow position: | chr11:33918415-33918060 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 7 |
| Conread position: | 16-362 |
| Cow position: | chr11:36900985-36901337 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 17-155 |
| Cow position: | chr11:85953803-85953665 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 113 |
| Conread position: | 28-150 |
| Cow position: | chr11:32391462-32391340 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-179 |
| Cow position: | chr11:37355827-37355987 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 28-362 |
| Cow position: | chr11:11683230-11682902 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 69 |
| Conread position: | 29-310 |
| Cow position: | chr11:51841965-51842252 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 29-313 |
| Cow position: | chr11:4176999-4176698 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 117, 261 |
| Conread position: | 29-362 |
| Cow position: | chr11:67775073-67774737 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 29-395 |
| Cow position: | chr11:11602212-11602596 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 248 |
| Conread position: | 52-306 |
| Cow position: | chr11:7548669-7548927 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 145 |
| Conread position: | 59-309 |
| Cow position: | chr11:39531014-39530756 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 176 |
| Conread position: | 62-158 |
| Cow position: | chr11:41482172-41482268 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-362 |
| Cow position: | chr11:31888761-31888451 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 132 |
| Conread position: | 64-378 |
| Cow position: | chr11:5188642-5188335 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 68-362 |
| Cow position: | chr11:5251625-5251925 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 129 |
| Conread position: | 72-230 |
| Cow position: | chr11:61286581-61286748 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 81-362 |
| Cow position: | chr11:6605228-6604939 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 83-516 |
| Cow position: | chr11:42471597-42472042 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 330 |
| Conread position: | 87-299 |
| Cow position: | chr11:19703977-19703749 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 88-373 |
| Cow position: | chr11:18480485-18480770 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 94-367 |
| Cow position: | chr11:17706913-17706631 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 123-362 |
| Cow position: | chr11:5144122-5144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 158-321 |
| Cow position: | chr11:70012531-70012697 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 183-360 |
| Cow position: | chr11:75202200-75202030 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 191-510 |
| Cow position: | chr11:32776975-32777308 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 191-516 |
| Cow position: | chr11:2421491-2421161 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 193-347 |
| Cow position: | chr11:34413770-34413925 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 196-509 |
| Cow position: | chr11:55010714-55011032 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 214 |
| Conread position: | 196-509 |
| Cow position: | chr11:82102830-82103140 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 214 |
| Conread position: | 196-510 |
| Cow position: | chr11:48662601-48662919 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 171 |
| Conread position: | 197-510 |
| Cow position: | chr11:73450279-73450592 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 198-511 |
| Cow position: | chr11:16197552-16197853 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 199-393 |
| Cow position: | chr11:85727900-85728104 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 199-487 |
| Cow position: | chr11:64888275-64887987 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 199-510 |
| Cow position: | chr11:40620856-40620549 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 199-511 |
| Cow position: | chr11:75260221-75259907 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 199-513 |
| Cow position: | chr11:37032125-37032441 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 199-516 |
| Cow position: | chr11:37916060-37915737 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 202-510 |
| Cow position: | chr11:26368368-26368047 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 213-401 |
| Cow position: | chr11:32601028-32600839 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 216-362 |
| Cow position: | chr11:61286754-61286901 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 241-508 |
| Cow position: | chr11:51329712-51329454 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 25 |
| Conread position: | 295-513 |
| Cow position: | chr11:68981899-68982120 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 147, 159 |
| Conread position: | 299-509 |
| Cow position: | chr11:35649286-35649077 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-511 |
| Cow position: | chr11:7911389-7911599 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 172, 22 |
| Conread position: | 299-513 |
| Cow position: | chr11:4593078-4593277 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 299-513 |
| Cow position: | chr11:30544675-30544464 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 175, 30 |
| Conread position: | 299-513 |
| Cow position: | chr11:35428542-35428760 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 299-513 |
| Cow position: | chr11:74535238-74535033 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 299-513 |
| Cow position: | chr11:80806996-80807212 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 172, 27 |
| Conread position: | 299-515 |
| Cow position: | chr11:76939365-76939152 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-530 |
| Cow position: | chr11:61518708-61518942 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 308-511 |
| Cow position: | chr11:4396364-4396564 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 311-510 |
| Cow position: | chr11:8476776-8476991 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 311-513 |
| Cow position: | chr11:5615811-5616016 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 311-513 |
| Cow position: | chr11:28243056-28242853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 101, 44 |
| Conread position: | 311-518 |
| Cow position: | chr11:36239269-36239471 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 312-515 |
| Cow position: | chr11:5161860-5161650 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 92, 96 |
| Conread position: | 313-513 |
| Cow position: | chr11:37008403-37008601 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 313-513 |
| Cow position: | chr11:38643468-38643265 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 91, 95 |
| Conread position: | 313-513 |
| Cow position: | chr11:70794816-70795019 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 315-513 |
| Cow position: | chr11:71988990-71988799 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 325-513 |
| Cow position: | chr11:44149191-44149001 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 331-532 |
| Cow position: | chr11:35643379-35643584 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 336-513 |
| Cow position: | chr11:73386332-73386511 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 101 |
| Conread position: | 386-510 |
| Cow position: | chr11:85728214-85728340 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 92, 57 |
| Conread position: | 389-510 |
| Cow position: | chr11:19566586-19566461 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 19 |
Show alignments to all cow chromosomes.