Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 15-177 |
| Cow position: | chr12:9381475-9381640 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 16-155 |
| Cow position: | chr12:9000722-9000583 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 16-252 |
| Cow position: | chr12:15180578-15180329 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 131, 242 |
| Conread position: | 28-144 |
| Cow position: | chr12:3016943-3016827 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-370 |
| Cow position: | chr12:8540904-8540559 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 29-310 |
| Cow position: | chr12:31622640-31622369 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 240, 38 |
| Conread position: | 59-235 |
| Cow position: | chr12:2911876-2911693 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 93, 140 |
| Conread position: | 59-368 |
| Cow position: | chr12:43226821-43226520 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 78-398 |
| Cow position: | chr12:34408402-34408732 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 213 |
| Conread position: | 193-362 |
| Cow position: | chr12:43972065-43972235 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 193-510 |
| Cow position: | chr12:12010221-12010537 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 196-510 |
| Cow position: | chr12:24176736-24176427 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 199-384 |
| Cow position: | chr12:28545450-28545270 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 199-474 |
| Cow position: | chr12:24544887-24545163 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 211 |
| Conread position: | 199-500 |
| Cow position: | chr12:13024967-13025284 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 180 |
| Conread position: | 199-514 |
| Cow position: | chr12:15383162-15383480 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 199-516 |
| Cow position: | chr12:19382866-19383191 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 200-378 |
| Cow position: | chr12:32954904-32955080 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 200-512 |
| Cow position: | chr12:1435715-1435399 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 201-396 |
| Cow position: | chr12:30922326-30922129 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 204-510 |
| Cow position: | chr12:19189861-19189559 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 211-513 |
| Cow position: | chr12:36596665-36596967 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 215-471 |
| Cow position: | chr12:12175820-12175554 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 235-510 |
| Cow position: | chr12:4475142-4475418 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 173 |
| Conread position: | 243-510 |
| Cow position: | chr12:30190068-30189813 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 233, 51 |
| Conread position: | 244-362 |
| Cow position: | chr12:15178974-15178857 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 246-497 |
| Cow position: | chr12:39318031-39318282 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 265-517 |
| Cow position: | chr12:5964109-5963855 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 274-513 |
| Cow position: | chr12:10353918-10354165 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 297-525 |
| Cow position: | chr12:8125820-8126044 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 299-513 |
| Cow position: | chr12:4309283-4309501 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 299-513 |
| Cow position: | chr12:10787597-10787381 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 299-513 |
| Cow position: | chr12:12025506-12025290 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 173, 139 |
| Conread position: | 299-513 |
| Cow position: | chr12:16913522-16913730 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 299-513 |
| Cow position: | chr12:27902511-27902716 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr12:33561786-33561573 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 299-518 |
| Cow position: | chr12:25434090-25433874 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 299-522 |
| Cow position: | chr12:11934745-11934523 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 302-513 |
| Cow position: | chr12:44952523-44952313 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 64 |
| Conread position: | 306-518 |
| Cow position: | chr12:34544318-34544102 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 124, 98 |
| Conread position: | 311-513 |
| Cow position: | chr12:3588375-3588579 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 311-513 |
| Cow position: | chr12:6068919-6068716 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 311-513 |
| Cow position: | chr12:30271319-30271118 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 22 |
| Conread position: | 311-513 |
| Cow position: | chr12:44476992-44476793 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 311-518 |
| Cow position: | chr12:27729858-27729647 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 314-513 |
| Cow position: | chr12:6268436-6268635 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 94 |
| Conread position: | 325-518 |
| Cow position: | chr12:15743414-15743218 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 146, 114 |
| Conread position: | 328-510 |
| Cow position: | chr12:47270705-47270520 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 334-513 |
| Cow position: | chr12:18131840-18132021 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 345-513 |
| Cow position: | chr12:39640259-39640096 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 388-511 |
| Cow position: | chr12:30921925-30921799 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 20 |
Show alignments to all cow chromosomes.