Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 1-534 |
| Cow position: | chr15:12863692-12864220 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 268 |
| Conread position: | 5-301 |
| Cow position: | chr15:18652741-18653042 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 9-163 |
| Cow position: | chr15:5844633-5844477 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-513 |
| Cow position: | chr15:45236872-45237387 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 441 |
| Conread position: | 14-247 |
| Cow position: | chr15:43560560-43560790 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 147, 52 |
| Conread position: | 14-306 |
| Cow position: | chr15:52952962-52953255 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 15-148 |
| Cow position: | chr15:48541728-48541861 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-155 |
| Cow position: | chr15:38890208-38890350 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 20-149 |
| Cow position: | chr15:18787782-18787915 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 20-172 |
| Cow position: | chr15:10538794-10538949 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 21-361 |
| Cow position: | chr15:11809792-11809455 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 106 |
| Conread position: | 29-284 |
| Cow position: | chr15:50294081-50293832 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 59-360 |
| Cow position: | chr15:44219550-44219232 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 140 |
| Conread position: | 59-362 |
| Cow position: | chr15:234377-234060 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 90, 111 |
| Conread position: | 63-362 |
| Cow position: | chr15:14258316-14258006 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 125-306 |
| Cow position: | chr15:42559554-42559372 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 193-362 |
| Cow position: | chr15:11620841-11620661 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 199-378 |
| Cow position: | chr15:10314033-10314212 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 199-499 |
| Cow position: | chr15:15214086-15214385 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 199-510 |
| Cow position: | chr15:37364884-37365194 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 156 |
| Conread position: | 199-510 |
| Cow position: | chr15:39499991-39499672 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 210 |
| Conread position: | 199-510 |
| Cow position: | chr15:45618424-45618131 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 199-516 |
| Cow position: | chr15:26127653-26127330 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 199-516 |
| Cow position: | chr15:27867791-27867476 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 206-339 |
| Cow position: | chr15:3727534-3727668 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 231-495 |
| Cow position: | chr15:36525146-36524876 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 233-510 |
| Cow position: | chr15:8453508-8453235 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 10 |
| Conread position: | 236-515 |
| Cow position: | chr15:43561023-43561300 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 295-513 |
| Cow position: | chr15:18692432-18692212 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 5 |
| Conread position: | 297-511 |
| Cow position: | chr15:45376324-45376527 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 299-433 |
| Cow position: | chr15:9681333-9681468 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 299-509 |
| Cow position: | chr15:15753099-15752887 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 168, 143 |
| Conread position: | 299-513 |
| Cow position: | chr15:13502358-13502568 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 299-513 |
| Cow position: | chr15:35061097-35060891 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 105, 21 |
| Conread position: | 299-513 |
| Cow position: | chr15:35631134-35631344 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 299-513 |
| Cow position: | chr15:38381503-38381715 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 171, 22 |
| Conread position: | 299-513 |
| Cow position: | chr15:51868882-51868665 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 299-518 |
| Cow position: | chr15:16387564-16387781 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 299-524 |
| Cow position: | chr15:45040804-45040576 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 301-434 |
| Cow position: | chr15:3702517-3702650 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 107 |
| Conread position: | 303-513 |
| Cow position: | chr15:52447008-52447218 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 100, 105 |
| Conread position: | 306-513 |
| Cow position: | chr15:16207321-16207524 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 168, 20 |
| Conread position: | 308-523 |
| Cow position: | chr15:42590916-42590699 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 311-498 |
| Cow position: | chr15:51036477-51036660 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 160, 15 |
| Conread position: | 325-513 |
| Cow position: | chr15:16598686-16598512 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 336-509 |
| Cow position: | chr15:33298897-33298724 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 336-516 |
| Cow position: | chr15:52870717-52870895 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 70 |
| Conread position: | 386-510 |
| Cow position: | chr15:44150337-44150466 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 395-516 |
| Cow position: | chr15:10314567-10314688 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 13 |
Show alignments to all cow chromosomes.