Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 4-306 |
| Cow position: | chr2:50192528-50192218 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 14-306 |
| Cow position: | chr2:556106-555803 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 80, 53 |
| Conread position: | 15-179 |
| Cow position: | chr2:70153851-70153679 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 113 |
| Conread position: | 20-179 |
| Cow position: | chr2:45772906-45773068 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 69 |
| Conread position: | 20-304 |
| Cow position: | chr2:37326910-37326620 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 74, 209 |
| Conread position: | 21-362 |
| Cow position: | chr2:46008939-46008599 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 206 |
| Conread position: | 28-180 |
| Cow position: | chr2:46024836-46024993 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 120, 153 |
| Conread position: | 28-291 |
| Cow position: | chr2:78801501-78801249 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 29-362 |
| Cow position: | chr2:39578687-39579017 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 29-362 |
| Cow position: | chr2:41697096-41697446 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 172 |
| Conread position: | 30-189 |
| Cow position: | chr2:46395825-46395985 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 44-306 |
| Cow position: | chr2:82159377-82159646 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 193 |
| Conread position: | 51-350 |
| Cow position: | chr2:28573883-28574192 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 51-365 |
| Cow position: | chr2:38897000-38897291 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 182, 16 |
| Conread position: | 52-149 |
| Cow position: | chr2:30639299-30639396 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-291 |
| Cow position: | chr2:46794318-46794544 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 59-360 |
| Cow position: | chr2:70829388-70829693 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 61 |
| Conread position: | 59-362 |
| Cow position: | chr2:66981742-66982049 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 146 |
| Conread position: | 59-380 |
| Cow position: | chr2:46966397-46966727 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 63-233 |
| Cow position: | chr2:46938693-46938866 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 89, 158 |
| Conread position: | 63-362 |
| Cow position: | chr2:46409168-46408850 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 77-320 |
| Cow position: | chr2:72604070-72603808 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 81-363 |
| Cow position: | chr2:54448320-54448611 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 116 |
| Conread position: | 88-513 |
| Cow position: | chr2:46267034-46267475 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 183-350 |
| Cow position: | chr2:46025231-46025399 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 144 |
| Conread position: | 193-373 |
| Cow position: | chr2:86527758-86527942 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 40, 173 |
| Conread position: | 195-361 |
| Cow position: | chr2:30639422-30639587 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 196-402 |
| Cow position: | chr2:45007845-45007633 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 36, 172 |
| Conread position: | 196-502 |
| Cow position: | chr2:2073058-2072735 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 184 |
| Conread position: | 198-510 |
| Cow position: | chr2:76048119-76048432 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 199-373 |
| Cow position: | chr2:57449347-57449173 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 199-395 |
| Cow position: | chr2:45308708-45308905 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 137 |
| Conread position: | 199-472 |
| Cow position: | chr2:5483492-5483763 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 199-474 |
| Cow position: | chr2:35995059-35994786 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 199-510 |
| Cow position: | chr2:76037778-76037467 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 199-510 |
| Cow position: | chr2:82928684-82928984 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 199-511 |
| Cow position: | chr2:23607977-23607658 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 199-516 |
| Cow position: | chr2:39580309-39580001 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 199-516 |
| Cow position: | chr2:40474031-40473709 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 200-510 |
| Cow position: | chr2:39796682-39796375 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 201 |
| Conread position: | 201-467 |
| Cow position: | chr2:6938836-6939100 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 239 |
| Conread position: | 201-516 |
| Cow position: | chr2:39790319-39790624 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 202-498 |
| Cow position: | chr2:44204257-44203957 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 242 |
| Conread position: | 212-516 |
| Cow position: | chr2:68224496-68224814 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 235-511 |
| Cow position: | chr2:65780664-65780387 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 245-362 |
| Cow position: | chr2:74693227-74693110 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 255-424 |
| Cow position: | chr2:74897188-74897019 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 107 |
| Conread position: | 263-509 |
| Cow position: | chr2:19236994-19237237 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 297-513 |
| Cow position: | chr2:36972731-36972523 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 299-510 |
| Cow position: | chr2:69085926-69086131 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-511 |
| Cow position: | chr2:66060715-66060506 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-511 |
| Cow position: | chr2:71235207-71235417 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr2:46322123-46322333 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 175, 24 |
| Conread position: | 299-513 |
| Cow position: | chr2:47880777-47880565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 161, 27 |
| Conread position: | 299-513 |
| Cow position: | chr2:48975376-48975177 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 299-513 |
| Cow position: | chr2:59057618-59057407 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 299-513 |
| Cow position: | chr2:67759555-67759342 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr2:71501737-71501519 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 299-513 |
| Cow position: | chr2:83216923-83216707 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 299-516 |
| Cow position: | chr2:74180338-74180122 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 176, 108 |
| Conread position: | 299-518 |
| Cow position: | chr2:15996898-15997119 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 301-524 |
| Cow position: | chr2:82419222-82419446 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 143 |
| Conread position: | 303-522 |
| Cow position: | chr2:41209445-41209213 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 310-523 |
| Cow position: | chr2:20865893-20866106 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 311-513 |
| Cow position: | chr2:3436838-3437042 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 311-513 |
| Cow position: | chr2:76306692-76306483 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 311-516 |
| Cow position: | chr2:20788601-20788806 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 84 |
| Conread position: | 316-510 |
| Cow position: | chr2:82137329-82137133 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 126 |
| Conread position: | 319-511 |
| Cow position: | chr2:54926415-54926217 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 320-516 |
| Cow position: | chr2:47178309-47178114 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 330-510 |
| Cow position: | chr2:81152445-81152260 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 336-513 |
| Cow position: | chr2:20539031-20538856 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 336-513 |
| Cow position: | chr2:26508326-26508148 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 138, 106 |
| Conread position: | 336-513 |
| Cow position: | chr2:44356558-44356737 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 72 |
| Conread position: | 360-516 |
| Cow position: | chr2:49983845-49984005 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 361-513 |
| Cow position: | chr2:32959042-32958888 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 380-518 |
| Cow position: | chr2:69593314-69593173 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 28 |
Show alignments to all cow chromosomes.