Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 2-306 |
| Cow position: | chr21:41093442-41093752 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 8-197 |
| Cow position: | chr21:41688341-41688141 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 187 |
| Conread position: | 14-299 |
| Cow position: | chr21:4939625-4939333 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 216 |
| Conread position: | 14-306 |
| Cow position: | chr21:40724082-40723785 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 80, 239 |
| Conread position: | 15-161 |
| Cow position: | chr21:41531844-41531991 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 15-362 |
| Cow position: | chr21:44721560-44721910 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 17-372 |
| Cow position: | chr21:24735767-24735405 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 20-155 |
| Cow position: | chr21:1188544-1188407 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 21-306 |
| Cow position: | chr21:23641223-23641513 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 208 |
| Conread position: | 26-362 |
| Cow position: | chr21:15249496-15249844 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 254 |
| Conread position: | 28-150 |
| Cow position: | chr21:43627106-43626983 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 28-240 |
| Cow position: | chr21:23640439-23640224 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 29-362 |
| Cow position: | chr21:20186566-20186216 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 29-362 |
| Cow position: | chr21:20786378-20786036 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 29-368 |
| Cow position: | chr21:9207342-9207000 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 30-362 |
| Cow position: | chr21:41548457-41548132 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 52-362 |
| Cow position: | chr21:6134993-6134685 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 83 |
| Conread position: | 57-231 |
| Cow position: | chr21:42475780-42475610 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 75 |
| Conread position: | 57-522 |
| Cow position: | chr21:24428783-24429266 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 59-378 |
| Cow position: | chr21:8850768-8851091 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 214 |
| Conread position: | 63-362 |
| Cow position: | chr21:6326992-6326688 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 65-372 |
| Cow position: | chr21:7074509-7074196 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 77-362 |
| Cow position: | chr21:17934152-17933854 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 136-321 |
| Cow position: | chr21:39326670-39326482 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 11, 163 |
| Conread position: | 198-511 |
| Cow position: | chr21:2854754-2854439 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 199-505 |
| Cow position: | chr21:26575868-26576175 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 199-520 |
| Cow position: | chr21:3790037-3789726 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 200-349 |
| Cow position: | chr21:4510266-4510115 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 200-509 |
| Cow position: | chr21:2988566-2988254 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 201-510 |
| Cow position: | chr21:1598082-1597771 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 203-472 |
| Cow position: | chr21:35696023-35695743 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 169 |
| Conread position: | 211-367 |
| Cow position: | chr21:23639858-23639705 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 211-496 |
| Cow position: | chr21:13391346-13391621 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 218-362 |
| Cow position: | chr21:42475419-42475274 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 229-581 |
| Cow position: | chr21:2523380-2523729 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 246-492 |
| Cow position: | chr21:22513145-22512896 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 275-513 |
| Cow position: | chr21:24983139-24983371 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 276-513 |
| Cow position: | chr21:39251153-39251390 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 299-494 |
| Cow position: | chr21:36641103-36641306 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 299-507 |
| Cow position: | chr21:39277481-39277687 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 299-512 |
| Cow position: | chr21:41442953-41443163 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-513 |
| Cow position: | chr21:1270039-1270246 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 178, 22 |
| Conread position: | 299-513 |
| Cow position: | chr21:8907088-8906874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 172, 143 |
| Conread position: | 299-513 |
| Cow position: | chr21:9975429-9975217 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 299-513 |
| Cow position: | chr21:10813824-10813617 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 175, 61 |
| Conread position: | 299-513 |
| Cow position: | chr21:10838401-10838185 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 105, 109 |
| Conread position: | 299-513 |
| Cow position: | chr21:15642353-15642564 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 174, 35 |
| Conread position: | 299-513 |
| Cow position: | chr21:25759833-25759619 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 175, 50 |
| Conread position: | 299-513 |
| Cow position: | chr21:30090562-30090360 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 139 |
| Conread position: | 299-513 |
| Cow position: | chr21:32511353-32511153 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 299-513 |
| Cow position: | chr21:41506086-41505874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 38 |
| Conread position: | 299-513 |
| Cow position: | chr21:41838288-41838505 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 172, 139 |
| Conread position: | 299-572 |
| Cow position: | chr21:9293454-9293175 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 105, 109 |
| Conread position: | 303-515 |
| Cow position: | chr21:39736414-39736629 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 100, 105 |
| Conread position: | 308-513 |
| Cow position: | chr21:25818183-25817985 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 310-513 |
| Cow position: | chr21:19372531-19372744 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 139 |
| Conread position: | 311-496 |
| Cow position: | chr21:22054611-22054417 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 137 |
| Conread position: | 311-509 |
| Cow position: | chr21:14780263-14780460 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 311-513 |
| Cow position: | chr21:8913253-8913049 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 311-513 |
| Cow position: | chr21:32432514-32432719 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 311-518 |
| Cow position: | chr21:3763230-3763018 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 312-513 |
| Cow position: | chr21:21565103-21565303 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 313-513 |
| Cow position: | chr21:7125665-7125468 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 341-515 |
| Cow position: | chr21:4509909-4509741 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 381-516 |
| Cow position: | chr21:39162907-39162767 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 24 |
Show alignments to all cow chromosomes.