Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 14-513 |
| Cow position: | chr23:4456596-4456094 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 43 |
| Conread position: | 14-513 |
| Cow position: | chr23:36379221-36379736 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 15-150 |
| Cow position: | chr23:3529545-3529679 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 15-176 |
| Cow position: | chr23:3521409-3521578 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 18-306 |
| Cow position: | chr23:25083063-25083340 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 28-362 |
| Cow position: | chr23:4506242-4506590 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 28-362 |
| Cow position: | chr23:38220943-38221282 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 29-353 |
| Cow position: | chr23:39092025-39092362 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 127, 61 |
| Conread position: | 44-381 |
| Cow position: | chr23:21730605-21730261 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 8 |
| Conread position: | 52-225 |
| Cow position: | chr23:5424420-5424602 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 35 |
| Conread position: | 54-500 |
| Cow position: | chr23:10705723-10705302 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 110 |
| Conread position: | 58-155 |
| Cow position: | chr23:27074906-27075004 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 59-242 |
| Cow position: | chr23:13562985-13562797 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 86, 137 |
| Conread position: | 59-362 |
| Cow position: | chr23:4785385-4785700 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 59-362 |
| Cow position: | chr23:27010126-27010441 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 59-363 |
| Cow position: | chr23:3552850-3552541 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 137 |
| Conread position: | 60-362 |
| Cow position: | chr23:14173541-14173864 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 75-246 |
| Cow position: | chr23:1165437-1165257 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 91-336 |
| Cow position: | chr23:39032765-39032502 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 173 |
| Conread position: | 95-306 |
| Cow position: | chr23:35974803-35974585 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 52, 185 |
| Conread position: | 129-306 |
| Cow position: | chr23:22734481-22734662 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 133-267 |
| Cow position: | chr23:37977529-37977390 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 146-373 |
| Cow position: | chr23:39492135-39491907 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 196-500 |
| Cow position: | chr23:5914625-5914308 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 141 |
| Conread position: | 196-510 |
| Cow position: | chr23:20076322-20076656 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 199-395 |
| Cow position: | chr23:2284500-2284697 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 199-511 |
| Cow position: | chr23:4352972-4353287 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 174 |
| Conread position: | 200-372 |
| Cow position: | chr23:6591059-6591231 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 233-425 |
| Cow position: | chr23:31111437-31111246 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 10 |
| Conread position: | 243-510 |
| Cow position: | chr23:2501578-2501315 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 256-510 |
| Cow position: | chr23:41256942-41257200 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 285-511 |
| Cow position: | chr23:5247014-5246787 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 119, 15 |
| Conread position: | 296-510 |
| Cow position: | chr23:39566250-39566462 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 299-497 |
| Cow position: | chr23:18589573-18589772 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 299-510 |
| Cow position: | chr23:8193410-8193623 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 175, 22 |
| Conread position: | 299-510 |
| Cow position: | chr23:35714868-35715078 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 115 |
| Conread position: | 299-513 |
| Cow position: | chr23:5249962-5249751 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr23:30243254-30243046 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 299-515 |
| Cow position: | chr23:14321692-14321480 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 299-557 |
| Cow position: | chr23:36094436-36094698 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 156, 143 |
| Conread position: | 300-510 |
| Cow position: | chr23:6721133-6721361 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 115 |
| Conread position: | 311-510 |
| Cow position: | chr23:19829903-19829706 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 311-512 |
| Cow position: | chr23:18932035-18931845 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 160, 17 |
| Conread position: | 311-513 |
| Cow position: | chr23:4530537-4530336 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 311-513 |
| Cow position: | chr23:15605603-15605808 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 311-516 |
| Cow position: | chr23:37751613-37751820 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 316-513 |
| Cow position: | chr23:40709386-40709587 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 336-510 |
| Cow position: | chr23:41243791-41243963 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 385-510 |
| Cow position: | chr23:40092045-40091917 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 386-510 |
| Cow position: | chr23:10684957-10684830 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 391-510 |
| Cow position: | chr23:2284919-2285033 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.