Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 4-304 |
| Cow position: | chr3:30048758-30048456 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 35 |
| Conread position: | 14-297 |
| Cow position: | chr3:40347646-40347360 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 15-155 |
| Cow position: | chr3:69219785-69219925 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 127, 72 |
| Conread position: | 15-177 |
| Cow position: | chr3:75076686-75076853 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 93 |
| Conread position: | 15-179 |
| Cow position: | chr3:28925793-28925958 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 15-179 |
| Cow position: | chr3:36543423-36543595 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 15-289 |
| Cow position: | chr3:19134707-19134980 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 15-583 |
| Cow position: | chr3:7146223-7146789 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 16-170 |
| Cow position: | chr3:59579516-59579359 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 16-320 |
| Cow position: | chr3:5053130-5052826 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 117 |
| Conread position: | 24-155 |
| Cow position: | chr3:56389286-56389154 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 28-162 |
| Cow position: | chr3:37255636-37255771 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 113 |
| Conread position: | 29-362 |
| Cow position: | chr3:9255755-9255440 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 128 |
| Conread position: | 29-362 |
| Cow position: | chr3:19230483-19230143 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 174 |
| Conread position: | 29-362 |
| Cow position: | chr3:67816241-67815895 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 216 |
| Conread position: | 37-362 |
| Cow position: | chr3:21714733-21715056 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 139 |
| Conread position: | 52-310 |
| Cow position: | chr3:14756158-14756421 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 59-254 |
| Cow position: | chr3:21134887-21135087 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 63-360 |
| Cow position: | chr3:40566687-40567007 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 64-319 |
| Cow position: | chr3:71471010-71470739 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 86-454 |
| Cow position: | chr3:63496339-63495958 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 93-306 |
| Cow position: | chr3:53214533-53214749 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 93-359 |
| Cow position: | chr3:14185767-14185487 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 59, 103 |
| Conread position: | 99-310 |
| Cow position: | chr3:6711960-6712172 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 110-363 |
| Cow position: | chr3:68661635-68661895 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 129-368 |
| Cow position: | chr3:58594931-58594684 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 240 |
| Conread position: | 182-398 |
| Cow position: | chr3:74797064-74797288 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 191-510 |
| Cow position: | chr3:29842741-29842417 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 193-393 |
| Cow position: | chr3:28717047-28716834 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 193-510 |
| Cow position: | chr3:9188256-9187949 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 196-496 |
| Cow position: | chr3:54563811-54563508 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 199-429 |
| Cow position: | chr3:60492409-60492177 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 199-474 |
| Cow position: | chr3:62740240-62739970 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 199-509 |
| Cow position: | chr3:51415002-51414690 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 199-582 |
| Cow position: | chr3:59579355-59578967 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 202-505 |
| Cow position: | chr3:81991636-81991944 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 212-496 |
| Cow position: | chr3:41407823-41408115 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 142 |
| Conread position: | 218-516 |
| Cow position: | chr3:36747996-36747694 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 221-380 |
| Cow position: | chr3:3643305-3643468 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 233-429 |
| Cow position: | chr3:81527288-81527483 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 60, 133 |
| Conread position: | 238-509 |
| Cow position: | chr3:74406829-74406569 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 238-516 |
| Cow position: | chr3:21278002-21278266 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 246-497 |
| Cow position: | chr3:7813196-7813458 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 255-402 |
| Cow position: | chr3:548377-548230 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 268-509 |
| Cow position: | chr3:28629846-28630089 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 269-510 |
| Cow position: | chr3:60535805-60535566 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 297-513 |
| Cow position: | chr3:23654521-23654307 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 177, 34 |
| Conread position: | 299-498 |
| Cow position: | chr3:13636421-13636623 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 102, 109 |
| Conread position: | 299-499 |
| Cow position: | chr3:6950088-6950285 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 299-499 |
| Cow position: | chr3:30245942-30245739 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 105, 109 |
| Conread position: | 299-513 |
| Cow position: | chr3:2085790-2085578 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 299-513 |
| Cow position: | chr3:2119511-2119297 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 299-513 |
| Cow position: | chr3:24156329-24156542 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 299-513 |
| Cow position: | chr3:24503366-24503577 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 299-513 |
| Cow position: | chr3:45171293-45171509 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 299-513 |
| Cow position: | chr3:60494856-60494634 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-513 |
| Cow position: | chr3:67824170-67824371 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-513 |
| Cow position: | chr3:77691832-77692038 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 299-513 |
| Cow position: | chr3:81368135-81368344 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 299-516 |
| Cow position: | chr3:5640982-5640768 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 311-508 |
| Cow position: | chr3:48566129-48565928 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 311-513 |
| Cow position: | chr3:23034879-23035081 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 311-518 |
| Cow position: | chr3:33158740-33158937 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 313-513 |
| Cow position: | chr3:32185648-32185449 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 313-513 |
| Cow position: | chr3:48337785-48337590 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 316-518 |
| Cow position: | chr3:54325341-54325548 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 92 |
Show alignments to all cow chromosomes.