Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 1-179 |
| Cow position: | chr5:17044593-17044410 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 5-306 |
| Cow position: | chr5:59072625-59072318 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 8-306 |
| Cow position: | chr5:8989106-8989411 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 14-306 |
| Cow position: | chr5:1801635-1801342 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 138, 45 |
| Conread position: | 14-306 |
| Cow position: | chr5:55767833-55768120 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 80, 112 |
| Conread position: | 20-220 |
| Cow position: | chr5:49633646-49633438 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 29-306 |
| Cow position: | chr5:7657798-7657512 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 204 |
| Conread position: | 29-306 |
| Cow position: | chr5:62001089-62000813 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 52 |
| Conread position: | 29-362 |
| Cow position: | chr5:33716041-33715687 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 256 |
| Conread position: | 52-362 |
| Cow position: | chr5:40699633-40699308 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 59-349 |
| Cow position: | chr5:44887864-44888170 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 109 |
| Conread position: | 59-362 |
| Cow position: | chr5:64105978-64105679 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 146 |
| Conread position: | 83-289 |
| Cow position: | chr5:66309106-66308906 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 97-360 |
| Cow position: | chr5:30412387-30412667 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 157 |
| Conread position: | 109-310 |
| Cow position: | chr5:34607245-34607033 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 191-499 |
| Cow position: | chr5:20188934-20188622 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 193-516 |
| Cow position: | chr5:69526757-69527090 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 206 |
| Conread position: | 194-432 |
| Cow position: | chr5:72590658-72590436 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 196-496 |
| Cow position: | chr5:44134695-44134386 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 175 |
| Conread position: | 199-402 |
| Cow position: | chr5:2425096-2425305 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 199-402 |
| Cow position: | chr5:43463465-43463670 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 199-509 |
| Cow position: | chr5:56623624-56623927 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 199-513 |
| Cow position: | chr5:48478747-48478436 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 199-516 |
| Cow position: | chr5:64183558-64183236 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 201-496 |
| Cow position: | chr5:64370917-64370619 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 245 |
| Conread position: | 201-510 |
| Cow position: | chr5:42714328-42714028 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 212-495 |
| Cow position: | chr5:56634972-56634683 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 233-494 |
| Cow position: | chr5:17848419-17848682 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 233-511 |
| Cow position: | chr5:36670126-36669850 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 275-511 |
| Cow position: | chr5:66307980-66307750 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 286-513 |
| Cow position: | chr5:45143507-45143730 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 291-510 |
| Cow position: | chr5:65147368-65147155 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 296-513 |
| Cow position: | chr5:19683483-19683263 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 103, 112 |
| Conread position: | 299-433 |
| Cow position: | chr5:44912176-44912042 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 299-466 |
| Cow position: | chr5:64068277-64068446 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 299-489 |
| Cow position: | chr5:50994908-50994715 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 299-499 |
| Cow position: | chr5:43156462-43156665 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 299-499 |
| Cow position: | chr5:75409368-75409168 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 299-505 |
| Cow position: | chr5:11443857-11443654 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 173, 35 |
| Conread position: | 299-511 |
| Cow position: | chr5:65144141-65143934 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 299-513 |
| Cow position: | chr5:10883148-10882936 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 160, 34 |
| Conread position: | 299-513 |
| Cow position: | chr5:14094996-14095202 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 299-513 |
| Cow position: | chr5:33983375-33983164 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-513 |
| Cow position: | chr5:47724510-47724297 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 299-513 |
| Cow position: | chr5:55295585-55295801 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr5:60124966-60125178 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-515 |
| Cow position: | chr5:25483478-25483691 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-516 |
| Cow position: | chr5:59786752-59786532 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 104, 113 |
| Conread position: | 299-516 |
| Cow position: | chr5:69122207-69121992 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 99, 71 |
| Conread position: | 299-518 |
| Cow position: | chr5:33910772-33910992 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 303-513 |
| Cow position: | chr5:60182964-60183172 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 308-513 |
| Cow position: | chr5:47491115-47490915 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 310-570 |
| Cow position: | chr5:47761645-47761390 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 311-508 |
| Cow position: | chr5:22185652-22185464 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 311-510 |
| Cow position: | chr5:44490736-44490934 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 311-513 |
| Cow position: | chr5:15604471-15604686 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 311-513 |
| Cow position: | chr5:21460271-21460470 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 165, 15 |
| Conread position: | 311-513 |
| Cow position: | chr5:48047351-48047152 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 311-513 |
| Cow position: | chr5:58447906-58448114 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 311-513 |
| Cow position: | chr5:60916722-60916519 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 312-502 |
| Cow position: | chr5:36405824-36405631 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 96 |
| Conread position: | 313-513 |
| Cow position: | chr5:8771034-8771237 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 88, 95 |
| Conread position: | 325-518 |
| Cow position: | chr5:14855915-14856109 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 330-510 |
| Cow position: | chr5:13198730-13198913 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 141, 112 |
| Conread position: | 333-511 |
| Cow position: | chr5:55170624-55170803 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 336-513 |
| Cow position: | chr5:34469768-34469592 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 142, 101 |
| Conread position: | 336-513 |
| Cow position: | chr5:48250533-48250710 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 72 |
| Conread position: | 367-513 |
| Cow position: | chr5:30555539-30555393 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 367-515 |
| Cow position: | chr5:64123532-64123683 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 105, 75 |
| Conread position: | 381-513 |
| Cow position: | chr5:75540888-75541019 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 27 |
Show alignments to all cow chromosomes.