Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 14-304 |
| Cow position: | chr6:35619750-35620045 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 14-306 |
| Cow position: | chr6:35461629-35461333 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 78 |
| Conread position: | 15-155 |
| Cow position: | chr6:44688683-44688543 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-362 |
| Cow position: | chr6:4065926-4066312 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 29-320 |
| Cow position: | chr6:20025378-20025097 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 29-362 |
| Cow position: | chr6:44110127-44109794 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 158 |
| Conread position: | 29-372 |
| Cow position: | chr6:36146991-36146630 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 58-362 |
| Cow position: | chr6:19012727-19012407 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 142 |
| Conread position: | 59-349 |
| Cow position: | chr6:45336991-45337285 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 144 |
| Conread position: | 59-362 |
| Cow position: | chr6:67736949-67736628 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 88, 213 |
| Conread position: | 59-510 |
| Cow position: | chr6:434711-435139 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 80 |
| Conread position: | 63-362 |
| Cow position: | chr6:44696894-44697167 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 169, 111 |
| Conread position: | 64-362 |
| Cow position: | chr6:58035290-58035592 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 81-466 |
| Cow position: | chr6:59988728-59988341 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 97-304 |
| Cow position: | chr6:60257975-60258187 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 136-362 |
| Cow position: | chr6:26938392-26938158 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 164-362 |
| Cow position: | chr6:49166590-49166792 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 188-499 |
| Cow position: | chr6:48024300-48023989 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 193-373 |
| Cow position: | chr6:60174458-60174641 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 170 |
| Conread position: | 196-419 |
| Cow position: | chr6:48376545-48376321 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 196-516 |
| Cow position: | chr6:34023623-34023292 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 175 |
| Conread position: | 199-432 |
| Cow position: | chr6:19709497-19709729 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 199-436 |
| Cow position: | chr6:42988782-42989029 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 199-509 |
| Cow position: | chr6:6380155-6379834 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 171 |
| Conread position: | 199-513 |
| Cow position: | chr6:25810337-25810027 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 200-434 |
| Cow position: | chr6:24304026-24304268 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 201-510 |
| Cow position: | chr6:65186181-65185884 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 92 |
| Conread position: | 233-518 |
| Cow position: | chr6:1629704-1629977 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 238-510 |
| Cow position: | chr6:57965073-57965338 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 272-511 |
| Cow position: | chr6:39706330-39706563 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 274-522 |
| Cow position: | chr6:60373577-60373815 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 199, 22 |
| Conread position: | 279-509 |
| Cow position: | chr6:64706084-64706302 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 297-513 |
| Cow position: | chr6:30021525-30021313 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 177, 36 |
| Conread position: | 299-509 |
| Cow position: | chr6:54879736-54879524 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 105, 109 |
| Conread position: | 299-512 |
| Cow position: | chr6:19710992-19710782 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 299-513 |
| Cow position: | chr6:26125087-26125296 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 299-513 |
| Cow position: | chr6:61431633-61431847 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 102, 109 |
| Conread position: | 299-518 |
| Cow position: | chr6:39743928-39743733 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 299-521 |
| Cow position: | chr6:49414255-49414487 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 113 |
| Conread position: | 299-566 |
| Cow position: | chr6:47169873-47169600 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 172, 143 |
| Conread position: | 303-511 |
| Cow position: | chr6:58916757-58916546 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 311-499 |
| Cow position: | chr6:68020170-68020355 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 311-511 |
| Cow position: | chr6:54084477-54084283 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 311-513 |
| Cow position: | chr6:27636233-27636028 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 311-513 |
| Cow position: | chr6:32521448-32521642 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 311-513 |
| Cow position: | chr6:49099509-49099311 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 311-513 |
| Cow position: | chr6:56674589-56674384 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 160, 131 |
| Conread position: | 311-572 |
| Cow position: | chr6:25627743-25627477 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 312-510 |
| Cow position: | chr6:27578483-27578689 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 312-516 |
| Cow position: | chr6:61211829-61211626 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 316-513 |
| Cow position: | chr6:55461889-55461687 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 88, 92 |
| Conread position: | 325-511 |
| Cow position: | chr6:54431257-54431445 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 326-510 |
| Cow position: | chr6:6812373-6812558 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 362-513 |
| Cow position: | chr6:65305692-65305845 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 46 |
Show alignments to all cow chromosomes.