Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 15-231 |
| Cow position: | chr9:6755755-6755543 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 73 |
| Conread position: | 17-505 |
| Cow position: | chr9:1020442-1020934 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 20-362 |
| Cow position: | chr9:10290732-10290384 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 21-272 |
| Cow position: | chr9:41953083-41953342 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 27-310 |
| Cow position: | chr9:49457749-49458041 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 246 |
| Conread position: | 28-362 |
| Cow position: | chr9:6589704-6590036 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 206 |
| Conread position: | 29-362 |
| Cow position: | chr9:21500096-21499757 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 172 |
| Conread position: | 29-362 |
| Cow position: | chr9:23950932-23950583 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 172 |
| Conread position: | 41-252 |
| Cow position: | chr9:36680963-36681176 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 106, 145 |
| Conread position: | 52-361 |
| Cow position: | chr9:51277884-51277569 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 59-320 |
| Cow position: | chr9:46994586-46994305 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 61-348 |
| Cow position: | chr9:26525383-26525681 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 61-362 |
| Cow position: | chr9:63662612-63662322 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 62-362 |
| Cow position: | chr9:7798230-7798541 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 112 |
| Conread position: | 63-360 |
| Cow position: | chr9:46090969-46090662 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 84, 135 |
| Conread position: | 65-362 |
| Cow position: | chr9:36396461-36396745 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 69 |
| Conread position: | 66-362 |
| Cow position: | chr9:36425762-36426063 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 66-362 |
| Cow position: | chr9:51279522-51279827 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 66-371 |
| Cow position: | chr9:56082999-56082686 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 78-310 |
| Cow position: | chr9:54108251-54108011 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 85-362 |
| Cow position: | chr9:25574259-25574534 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 94 |
| Conread position: | 159-510 |
| Cow position: | chr9:21103094-21103458 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 222 |
| Conread position: | 193-509 |
| Cow position: | chr9:11425116-11425427 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 196-496 |
| Cow position: | chr9:10889261-10888948 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 196-510 |
| Cow position: | chr9:53332567-53332888 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 197-516 |
| Cow position: | chr9:21900116-21900428 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 136 |
| Conread position: | 198-516 |
| Cow position: | chr9:61445938-61445615 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 199-347 |
| Cow position: | chr9:61139966-61139819 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 199-510 |
| Cow position: | chr9:48070414-48070098 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 199-511 |
| Cow position: | chr9:30111082-30111401 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 199-513 |
| Cow position: | chr9:61312576-61312885 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 227-510 |
| Cow position: | chr9:7056746-7057033 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 136 |
| Conread position: | 243-510 |
| Cow position: | chr9:43834146-43833877 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 243-511 |
| Cow position: | chr9:6269315-6269583 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 245-510 |
| Cow position: | chr9:31545107-31544847 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 296-510 |
| Cow position: | chr9:27372887-27372672 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 105, 115 |
| Conread position: | 299-499 |
| Cow position: | chr9:50464839-50464641 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-513 |
| Cow position: | chr9:10969499-10969705 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 175, 35 |
| Conread position: | 299-513 |
| Cow position: | chr9:26700528-26700738 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 299-513 |
| Cow position: | chr9:35837031-35837245 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 299-513 |
| Cow position: | chr9:38864170-38864382 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 299-513 |
| Cow position: | chr9:44323380-44323590 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 299-513 |
| Cow position: | chr9:50684161-50683943 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 299-513 |
| Cow position: | chr9:58399468-58399258 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 173, 35 |
| Conread position: | 299-516 |
| Cow position: | chr9:52009716-52009930 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 299-518 |
| Cow position: | chr9:21653047-21652831 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 299-518 |
| Cow position: | chr9:35183489-35183268 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 311-493 |
| Cow position: | chr9:41902650-41902462 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 100 |
| Conread position: | 311-505 |
| Cow position: | chr9:45229317-45229508 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 311-513 |
| Cow position: | chr9:35191725-35191520 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 311-518 |
| Cow position: | chr9:48518562-48518768 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 312-513 |
| Cow position: | chr9:28850468-28850663 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 160, 12 |
| Conread position: | 321-513 |
| Cow position: | chr9:44327463-44327652 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 325-510 |
| Cow position: | chr9:11359348-11359163 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 146, 7 |
| Conread position: | 334-515 |
| Cow position: | chr9:5064371-5064556 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 337-513 |
| Cow position: | chr9:45947124-45947290 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 338-513 |
| Cow position: | chr9:4961574-4961394 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 70 |
| Conread position: | 350-513 |
| Cow position: | chr9:61292170-61292327 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 350-526 |
| Cow position: | chr9:6856697-6856518 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 382-510 |
| Cow position: | chr9:32642787-32642656 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 403-513 |
| Cow position: | chr9:4701050-4701163 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 41 |
Show alignments to all cow chromosomes.