Cow genome map
| Conread name: | Liv1-LVRM10114E02 |
| Conread position: | 12-179 |
| Cow position: | chrX:25179923-25179754 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 14-306 |
| Cow position: | chrX:39807453-39807745 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 15-179 |
| Cow position: | chrX:14049187-14049350 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 15-395 |
| Cow position: | chrX:45570223-45569836 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 20-155 |
| Cow position: | chrX:29372783-29372650 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 20-376 |
| Cow position: | chrX:34767419-34767795 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 51 |
| Conread position: | 28-160 |
| Cow position: | chrX:38741622-38741491 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 28-362 |
| Cow position: | chrX:16893940-16893609 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 28-363 |
| Cow position: | chrX:40316216-40315870 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 174 |
| Conread position: | 29-362 |
| Cow position: | chrX:25267154-25266803 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 30-150 |
| Cow position: | chrX:35982069-35981949 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-228 |
| Cow position: | chrX:6363137-6363330 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 62-317 |
| Cow position: | chrX:31910429-31910692 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 139 |
| Conread position: | 64-353 |
| Cow position: | chrX:1742615-1742913 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 280 |
| Conread position: | 64-378 |
| Cow position: | chrX:38128912-38129241 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 65-291 |
| Cow position: | chrX:16895648-16895883 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 67-361 |
| Cow position: | chrX:29816126-29815829 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 210 |
| Conread position: | 74-358 |
| Cow position: | chrX:33159368-33159071 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 206 |
| Conread position: | 76-310 |
| Cow position: | chrX:13600633-13600871 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 76, 157 |
| Conread position: | 80-314 |
| Cow position: | chrX:12835292-12835047 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 67, 203 |
| Conread position: | 81-215 |
| Cow position: | chrX:25858274-25858414 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 156-363 |
| Cow position: | chrX:34626356-34626565 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 191-516 |
| Cow position: | chrX:44744980-44745317 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 197-564 |
| Cow position: | chrX:29035858-29036238 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 215 |
| Conread position: | 199-436 |
| Cow position: | chrX:22436873-22437111 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 199-500 |
| Cow position: | chrX:28859149-28858848 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 199-509 |
| Cow position: | chrX:46813250-46813567 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 203-496 |
| Cow position: | chrX:32751614-32751913 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 237-510 |
| Cow position: | chrX:30026605-30026871 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 255-497 |
| Cow position: | chrX:28847620-28847867 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 107 |
| Conread position: | 285-513 |
| Cow position: | chrX:26246409-26246180 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 299-511 |
| Cow position: | chrX:25200795-25201004 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 299-511 |
| Cow position: | chrX:39205645-39205854 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 299-513 |
| Cow position: | chrX:9342432-9342645 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 174, 35 |
| Conread position: | 299-513 |
| Cow position: | chrX:34814087-34813874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 174, 37 |
| Conread position: | 299-515 |
| Cow position: | chrX:7544814-7544595 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 308-450 |
| Cow position: | chrX:41387555-41387414 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 100 |
| Conread position: | 311-510 |
| Cow position: | chrX:15327825-15328027 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 313-464 |
| Cow position: | chrX:47296684-47296833 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 334-496 |
| Cow position: | chrX:32018690-32018854 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 339-509 |
| Cow position: | chrX:25190806-25190633 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 382-510 |
| Cow position: | chrX:45640988-45641122 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 386-500 |
| Cow position: | chrX:37514947-37514830 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 390-513 |
| Cow position: | chrX:45569378-45569253 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 14 |
Show alignments to all cow chromosomes.