Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-311 |
| Cow position: | chr10:17433503-17433803 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 1-373 |
| Cow position: | chr10:48397950-48397595 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 1-386 |
| Cow position: | chr10:20382863-20382508 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 1-390 |
| Cow position: | chr10:64146077-64146452 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 1-395 |
| Cow position: | chr10:39778963-39778588 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 1-397 |
| Cow position: | chr10:29631653-29631263 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 132 |
| Conread position: | 1-402 |
| Cow position: | chr10:24311217-24310844 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 1-421 |
| Cow position: | chr10:19544231-19543836 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 1-428 |
| Cow position: | chr10:53321249-53320833 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 152 |
| Conread position: | 1-429 |
| Cow position: | chr10:14334699-14334270 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-437 |
| Cow position: | chr10:22583871-22583445 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 1-437 |
| Cow position: | chr10:51782263-51781840 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 1-451 |
| Cow position: | chr10:39878282-39877836 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 1-452 |
| Cow position: | chr10:38344210-38343779 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 44 |
| Conread position: | 1-456 |
| Cow position: | chr10:2119867-2119420 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr10:10583263-10583713 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr10:14853008-14853442 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 1-456 |
| Cow position: | chr10:20375686-20375254 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 130 |
| Conread position: | 1-456 |
| Cow position: | chr10:21488112-21488547 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr10:21883930-21884368 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 82, 33 |
| Conread position: | 1-456 |
| Cow position: | chr10:24976624-24976216 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-456 |
| Cow position: | chr10:29011506-29011077 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 1-456 |
| Cow position: | chr10:29845498-29845068 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr10:39040148-39039715 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr10:62407632-62407191 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 134 |
| Conread position: | 1-460 |
| Cow position: | chr10:57988845-57988401 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 33 |
| Conread position: | 1-531 |
| Cow position: | chr10:50135716-50136229 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 2-387 |
| Cow position: | chr10:14842933-14843287 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 359, 32 |
| Conread position: | 2-423 |
| Cow position: | chr10:44102301-44102693 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 407, 39 |
| Conread position: | 5-597 |
| Cow position: | chr10:42641746-42642304 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 6-456 |
| Cow position: | chr10:1378657-1379087 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 6-456 |
| Cow position: | chr10:7280951-7280514 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 7-450 |
| Cow position: | chr10:126440-126869 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 7-456 |
| Cow position: | chr10:30684341-30683900 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 7-456 |
| Cow position: | chr10:44708459-44708019 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 8-456 |
| Cow position: | chr10:7897329-7896890 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr10:19840838-19841270 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 8-456 |
| Cow position: | chr10:28642690-28643131 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr10:39815244-39814807 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 8-456 |
| Cow position: | chr10:41568254-41568692 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr10:57556182-57555744 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-595 |
| Cow position: | chr10:28256260-28255699 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 9-390 |
| Cow position: | chr10:28946638-28947002 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 9-452 |
| Cow position: | chr10:40398159-40398575 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 31 |
| Conread position: | 14-433 |
| Cow position: | chr10:11684472-11684060 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 16-456 |
| Cow position: | chr10:55094432-55094857 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 17-373 |
| Cow position: | chr10:51774043-51773706 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 17-426 |
| Cow position: | chr10:14862846-14863217 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 17-452 |
| Cow position: | chr10:36469285-36468879 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 25 |
| Conread position: | 17-456 |
| Cow position: | chr10:19495126-19494698 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr10:21399516-21399092 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr10:21739584-21739164 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 17-456 |
| Cow position: | chr10:41878085-41878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 19-472 |
| Cow position: | chr10:11821910-11822356 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 20-335 |
| Cow position: | chr10:55285126-55285430 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 20-455 |
| Cow position: | chr10:57501974-57502389 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 28-549 |
| Cow position: | chr10:19512754-19513274 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 29-456 |
| Cow position: | chr10:14805019-14805437 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 29-456 |
| Cow position: | chr10:33870459-33870876 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 121 |
| Conread position: | 29-456 |
| Cow position: | chr10:39180972-39181387 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 52-456 |
| Cow position: | chr10:38722319-38722686 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 63-456 |
| Cow position: | chr10:16477970-16478333 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 70-456 |
| Cow position: | chr10:37771101-37771475 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 80 |
| Conread position: | 77-387 |
| Cow position: | chr10:29101495-29101202 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 211, 46 |
| Conread position: | 111-380 |
| Cow position: | chr10:6538643-6538910 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 142-398 |
| Cow position: | chr10:19721810-19721561 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 199, 30 |
| Conread position: | 143-456 |
| Cow position: | chr10:25652142-25651838 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 146-456 |
| Cow position: | chr10:68160346-68160046 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 182-456 |
| Cow position: | chr10:53485913-53485643 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 187-390 |
| Cow position: | chr10:487011-486802 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 198-396 |
| Cow position: | chr10:28530132-28529941 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 204-456 |
| Cow position: | chr10:19706297-19706046 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 205-456 |
| Cow position: | chr10:10172070-10172326 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 20, 204 |
| Conread position: | 205-456 |
| Cow position: | chr10:16927001-16927260 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 205-456 |
| Cow position: | chr10:29109636-29109395 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 170, 33 |
| Conread position: | 209-452 |
| Cow position: | chr10:32430058-32430301 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 184 |
| Conread position: | 212-456 |
| Cow position: | chr10:8291394-8291637 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 213-428 |
| Cow position: | chr10:46196421-46196617 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 162, 20 |
| Conread position: | 220-456 |
| Cow position: | chr10:46192500-46192732 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 224-456 |
| Cow position: | chr10:22346320-22346551 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 231-452 |
| Cow position: | chr10:58376932-58376721 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 161, 48 |
| Conread position: | 257-456 |
| Cow position: | chr10:39439544-39439743 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 475-595 |
| Cow position: | chr10:24976227-24976099 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.