Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-349 |
| Cow position: | chr11:4056701-4056377 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 336, 43 |
| Conread position: | 1-358 |
| Cow position: | chr11:17795689-17795324 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 1-396 |
| Cow position: | chr11:21890190-21889830 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 1-397 |
| Cow position: | chr11:50016216-50015830 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 1-402 |
| Cow position: | chr11:28391749-28392142 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 1-436 |
| Cow position: | chr11:66729882-66730297 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-452 |
| Cow position: | chr11:11988922-11989359 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 1-452 |
| Cow position: | chr11:26548304-26548756 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-452 |
| Cow position: | chr11:38834648-38834221 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:10848237-10848683 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr11:19101708-19101263 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr11:23880817-23881258 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:24394100-24394545 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:26124140-26123696 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:29667819-29667367 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:30123052-30122614 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 1-456 |
| Cow position: | chr11:41169907-41169465 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr11:42311654-42311214 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 318 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 1-456 |
| Cow position: | chr11:44156460-44156031 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-456 |
| Cow position: | chr11:44582548-44582112 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:49039598-49039150 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 1-456 |
| Cow position: | chr11:71330382-71330830 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr11:87142368-87142812 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 1-468 |
| Cow position: | chr11:4269615-4269157 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 2-456 |
| Cow position: | chr11:10883094-10883519 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 2-456 |
| Cow position: | chr11:45921821-45921378 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 3-369 |
| Cow position: | chr11:59038983-59038640 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 303, 17 |
| Conread position: | 3-386 |
| Cow position: | chr11:41190197-41190569 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 3-396 |
| Cow position: | chr11:80473480-80473111 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 372, 26 |
| Conread position: | 6-389 |
| Cow position: | chr11:15535267-15535628 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 200, 53 |
| Conread position: | 6-456 |
| Cow position: | chr11:4026818-4026381 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 6-456 |
| Cow position: | chr11:58135188-58135625 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 7-383 |
| Cow position: | chr11:52314752-52314395 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 7-444 |
| Cow position: | chr11:26564294-26563887 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 7-452 |
| Cow position: | chr11:53431257-53430809 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 7-456 |
| Cow position: | chr11:9156358-9155921 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 7-456 |
| Cow position: | chr11:20733443-20733004 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 8-388 |
| Cow position: | chr11:47759487-47759116 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 8-456 |
| Cow position: | chr11:17106889-17106451 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 8-456 |
| Cow position: | chr11:17546956-17547388 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr11:29613200-29612764 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 8-456 |
| Cow position: | chr11:32452621-32453062 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr11:57627259-57626821 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr11:63654539-63654103 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 8-456 |
| Cow position: | chr11:67451289-67451723 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 9-351 |
| Cow position: | chr11:50042341-50042023 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 9-452 |
| Cow position: | chr11:32251637-32251222 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-456 |
| Cow position: | chr11:72310236-72309807 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 13-395 |
| Cow position: | chr11:21899044-21898673 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 14-390 |
| Cow position: | chr11:33977657-33977290 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 14-436 |
| Cow position: | chr11:52420202-52420613 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 16-387 |
| Cow position: | chr11:64355625-64355977 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 16-389 |
| Cow position: | chr11:2882610-2882261 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 16-594 |
| Cow position: | chr11:12357612-12357054 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 17-456 |
| Cow position: | chr11:28228963-28228537 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr11:44518062-44517635 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-550 |
| Cow position: | chr11:49553372-49552852 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 27-456 |
| Cow position: | chr11:26070236-26069811 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 28-435 |
| Cow position: | chr11:35504392-35504002 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 28-452 |
| Cow position: | chr11:85393016-85392607 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 34-426 |
| Cow position: | chr11:21011515-21011130 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 35-437 |
| Cow position: | chr11:75554179-75553798 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 55-503 |
| Cow position: | chr11:59628738-59628307 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 63-456 |
| Cow position: | chr11:67845722-67845341 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 82-595 |
| Cow position: | chr11:18070070-18069592 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 68 |
| Conread position: | 87-397 |
| Cow position: | chr11:63275527-63275230 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 206, 38 |
| Conread position: | 94-456 |
| Cow position: | chr11:54216379-54216029 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 193, 56 |
| Conread position: | 104-456 |
| Cow position: | chr11:27657335-27657658 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 188, 46 |
| Conread position: | 141-452 |
| Cow position: | chr11:54484361-54484056 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 183-400 |
| Cow position: | chr11:46779891-46779672 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 194-450 |
| Cow position: | chr11:75357196-75357456 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 197-492 |
| Cow position: | chr11:36763912-36764211 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 104, 77 |
| Conread position: | 202-456 |
| Cow position: | chr11:28053667-28053411 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 205-360 |
| Cow position: | chr11:21444441-21444597 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 209-456 |
| Cow position: | chr11:44231445-44231696 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 178 |
| Conread position: | 211-389 |
| Cow position: | chr11:1489183-1489003 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 211-396 |
| Cow position: | chr11:28421106-28421288 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 211-442 |
| Cow position: | chr11:2833313-2833544 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 201 |
| Conread position: | 211-456 |
| Cow position: | chr11:25865851-25865614 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 211-456 |
| Cow position: | chr11:27669005-27668764 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 231-456 |
| Cow position: | chr11:30208141-30208362 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 254-466 |
| Cow position: | chr11:13064952-13064743 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 179, 46 |
Show alignments to all cow chromosomes.